Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 1.6e-95 352.8 193 100.0
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 3.9e-89 331.6 193 94.8
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.0e-65 253.8 191 75.9
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.8e-65 253.1 193 72.5
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.1e-64 250.4 191 72.3
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 1.2e-61 240.4 136 93.4
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 8.5e-52 207.6 191 67.0
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 2.4e-46 189.5 203 64.5
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 2.7e-45 186.0 201 64.2
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 2.9e-36 156.0 214 51.9
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 3.8e-36 155.6 198 53.0
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 8.6e-36 154.5 199 51.3
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 3.3e-35 152.5 206 50.0
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 9.5e-35 151.0 197 54.8
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 9.5e-35 151.0 203 52.7
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 2.6e-32 142.9 196 48.0
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 2.6e-32 142.9 199 49.2
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 3.7e-31 139.0 200 48.5
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 1.4e-30 137.1 196 46.9
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 7.0e-30 134.8 185 51.9
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.6e-29 133.7 183 51.4
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 2.0e-29 133.3 184 46.7
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 7.8e-29 131.3 183 50.8
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 2.9e-28 129.4 189 47.1
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 1.5e-27 127.1 188 48.4
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.5e-27 127.1 180 49.4
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 1.9e-27 126.7 201 43.8
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 2.5e-27 126.3 199 43.7
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 2.5e-27 126.3 195 45.6
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 5.6e-27 125.2 198 46.5
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.0e-25 120.9 193 44.6
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 1.4e-25 120.6 183 45.4
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.8e-25 120.2 223 50.7
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 2.3e-25 119.8 216 47.2
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 2.3e-25 119.8 216 47.2
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 2.3e-25 119.8 172 45.9
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 3.1e-25 119.4 193 47.7
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 3.1e-25 119.4 199 45.2
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 4.0e-25 119.0 187 44.9
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 4.0e-25 119.0 163 49.7
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 8.9e-25 117.9 213 47.9
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 8.9e-25 117.9 191 47.1
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 1.2e-24 117.5 178 47.8
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.5e-24 117.1 135 57.0
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 5.8e-24 115.2 185 45.9
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.7e-23 113.6 195 44.6
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 2.9e-23 112.8 194 42.3
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 2.9e-23 112.8 180 45.0
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 8.3e-23 111.3 188 41.0
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 1.4e-22 110.5 207 44.0
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 1.9e-22 110.2 194 41.8
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 1.9e-22 110.2 152 46.7
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 2.4e-22 109.8 190 41.1
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 2.4e-22 109.8 200 45.0
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.4e-22 109.8 207 44.9
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.2e-21 107.5 188 41.5
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.2e-21 107.5 188 41.5
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 1.2e-21 107.5 217 39.2
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 1.6e-21 107.1 212 40.1
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 1.6e-21 107.1 209 41.1
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.6e-21 107.1 204 45.1
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 2.7e-21 106.3 174 43.1
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 3.5e-21 105.9 197 44.7
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 3.5e-21 105.9 175 43.4
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 4.6e-21 105.5 206 39.3
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 6.0e-21 105.1 213 40.4
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 7.8e-21 104.8 178 42.1
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 1.0e-20 104.4 192 41.7
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.7e-20 103.6 202 42.1
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 3.0e-20 102.8 194 43.3
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.0e-20 102.8 175 42.3
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 5.0e-20 102.1 204 45.1
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 5.0e-20 102.1 191 40.8
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 6.6e-20 101.7 206 41.7
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 6.6e-20 101.7 212 38.2
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 8.6e-20 101.3 203 40.4
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 8.6e-20 101.3 191 40.8
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 8.6e-20 101.3 206 44.2
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 1.1e-19 100.9 199 39.2
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 2.5e-19 99.8 229 39.7
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 5.6e-19 98.6 208 40.9
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 7.3e-19 98.2 219 39.7
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 9.5e-19 97.8 205 38.0
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 9.5e-19 97.8 197 36.5
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.2e-18 97.4 210 41.9
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.6e-18 97.1 213 41.8
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.8e-18 96.3 210 40.0
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.8e-18 96.3 204 41.7
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 4.7e-18 95.5 206 37.4
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 4.7e-18 95.5 134 48.5
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 6.2e-18 95.1 160 48.8
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 6.2e-18 95.1 221 40.3
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 1.4e-17 94.0 204 38.7
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 1.4e-17 94.0 188 38.8
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.4e-17 94.0 225 38.2
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 1.8e-17 93.6 199 41.2
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 1.8e-17 93.6 199 41.2
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 1.8e-17 93.6 190 40.0
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.8e-17 93.6 212 40.6
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 1.8e-17 93.6 187 41.2
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.3e-17 93.2 227 37.9
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 4.0e-17 92.4 216 41.7
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 4.0e-17 92.4 207 45.9
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 5.2e-17 92.0 191 41.4
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 6.8e-17 91.7 184 41.3
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 8.9e-17 91.3 95 60.0
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 2.6e-16 89.7 204 40.7
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 3.4e-16 89.4 197 38.6
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 4.4e-16 89.0 205 37.1
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 5.8e-16 88.6 200 40.0
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 5.8e-16 88.6 193 40.4
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 9.8e-16 87.8 183 40.4
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 9.8e-16 87.8 183 40.4
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 1.7e-15 87.0 183 39.3
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 1.7e-15 87.0 219 39.7
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 2.2e-15 86.7 155 41.9
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 2.9e-15 86.3 202 39.1
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 4.9e-15 85.5 92 65.2
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 6.4e-15 85.1 206 36.9
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 8.3e-15 84.7 216 37.5
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 8.3e-15 84.7 239 38.1
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 1.1e-14 84.3 213 35.7
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.1e-14 84.3 201 42.8
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 1.4e-14 84.0 211 40.8
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 4.1e-14 82.4 240 38.3
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.2e-13 80.9 195 39.0
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.1e-13 80.1 221 36.7
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 2.7e-13 79.7 240 37.9
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 6.0e-13 78.6 206 35.0
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 6.0e-13 78.6 207 37.7
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.7e-12 77.0 85 56.5
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 5.1e-12 75.5 188 32.4
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 1.1e-11 74.3 179 37.4
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.1e-11 74.3 217 34.1
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 1.1e-11 74.3 214 37.9
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 7.3e-11 71.6 109 50.5
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 9.5e-11 71.2 200 35.0
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 9.5e-11 71.2 185 36.2
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.6e-10 70.5 172 37.8
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.8e-10 69.7 234 35.0
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.8e-10 69.7 92 56.5
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 2.8e-10 69.7 187 31.6
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 1.1e-09 67.8 191 38.7
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.2e-08 64.3 44 68.2
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 1.3e-07 60.8 79 46.8
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 2.2e-07 60.1 86 43.0
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 6.4e-07 58.5 78 48.7
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 6.4e-07 58.5 76 44.7
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 5.4e-06 55.5 165 32.1


User provided reference genes

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