Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008003 Carpinus fangiana HOM05D007778 ORTHO05D009819 4.6e-103 377.9 187 100.0
Haze_14055 Corylus avellana HOM05D007778 ORTHO05D009819 4.1e-75 285.0 151 92.1
Haze_14066 Corylus avellana HOM05D007778 ORTHO05D009819 4.1e-75 285.0 151 92.1
QL02p054670 Quercus lobata HOM05D007778 ORTHO05D009819 2.9e-49 199.1 148 69.6
CiPaw.03G008500 Carya illinoinensis HOM05D007778 ORTHO05D009819 7.5e-45 184.5 153 66.7
Atru.chr1.1920 Acer truncatum HOM05D007778 ORTHO05D009819 1.5e-37 160.2 151 57.0
Prupe.3G011900 Prunus persica HOM05D007778 ORTHO05D009819 1.1e-35 154.1 156 51.9
Ciclev10012879m.g Citrus clementina HOM05D007778 ORTHO05D009819 5.4e-35 151.8 151 55.0
Thecc.04G114700 Theobroma cacao HOM05D007778 ORTHO05D009819 3.0e-33 146.0 151 51.0
Sabra17G0107900 Salix brachista HOM05D007778 ORTHO05D009819 1.5e-32 143.7 135 51.9
VMungo0540G2068 Vigna mungo HOM05D007778 ORTHO05D009819 1.5e-32 143.7 145 51.0
Manes.01G118400 Manihot esculenta HOM05D007778 ORTHO05D009819 1.9e-32 143.3 154 50.0
RcHm_v2.0_Chr3g0487781 Rosa chinensis HOM05D007778 ORTHO05D009819 9.5e-32 141.0 144 51.4
Lalb_Chr15g0085401 Lupinus albus HOM05D007778 ORTHO05D009819 2.1e-31 139.8 163 48.5
Potri.017G129700 Populus trichocarpa HOM05D007778 ORTHO05D009819 1.0e-30 137.5 154 46.8
FvH4_1g27614 Fragaria vesca HOM05D007778 ORTHO05D009819 1.8e-30 136.7 140 50.7
Glyma.18G046700 Glycine max HOM05D007778 ORTHO05D009819 3.1e-30 136.0 149 50.3
Aqoxy3G04229 Aquilegia oxysepala HOM05D007778 ORTHO05D009819 4.0e-30 135.6 133 54.1
Duzib211G0615 Durio zibethinus HOM05D007778 ORTHO05D009819 8.9e-30 134.4 152 48.0
TWI74G0094 Tripterygium wilfordii HOM05D007778 ORTHO05D009819 2.0e-29 133.3 133 51.1
FAN28G2555 Fragaria x ananassa HOM05D007778 ORTHO05D009819 9.8e-29 131.0 133 51.9
MD09G1282000 Malus domestica HOM05D007778 ORTHO05D009819 1.7e-28 130.2 154 47.4
Glyma.11G204300 Glycine max HOM05D007778 ORTHO05D009819 2.2e-28 129.8 150 48.7
AUR62004744 Chenopodium quinoa HOM05D007778 ORTHO05D009819 4.9e-28 128.6 136 51.5
AUR62037508 Chenopodium quinoa HOM05D007778 ORTHO05D009819 6.4e-28 128.3 151 49.0
Dinv17427 Davidia involucrata HOM05D007778 ORTHO05D009819 6.4e-28 128.3 114 57.9
Nn4g24886 Nelumbo nucifera HOM05D007778 ORTHO05D009819 6.4e-28 128.3 146 47.9
Phvul.006G084300 Phaseolus vulgaris HOM05D007778 ORTHO05D009819 6.4e-28 128.3 144 47.9
Lj6g0006010 Lotus japonicus HOM05D007778 ORTHO05D009819 1.9e-27 126.7 144 46.5
Cpa.g.sc116.56 Carica papaya HOM05D007778 ORTHO05D009819 4.1e-27 125.6 150 47.3
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 7.0e-27 124.8 112 58.0
Cc07_g09880 Coffea canephora HOM05D007778 ORTHO05D009819 9.2e-27 124.4 90 63.3
COL.COLO4_05993 Corchorus olitorius HOM05D007778 ORTHO05D009819 4.6e-26 122.1 102 56.9
Medtr3g064070 Medicago truncatula HOM05D007778 ORTHO05D009819 4.6e-26 122.1 151 45.7
PGR102G3280 Punica granatum HOM05D007778 ORTHO05D009819 6.0e-26 121.7 152 43.4
FAN28G0539 Fragaria x ananassa HOM05D007778 ORTHO05D009819 1.0e-25 120.9 117 53.8
TPR.G37414 Trifolium pratense HOM05D007778 ORTHO05D009819 1.0e-25 120.9 142 47.9
MD09G1282100 Malus domestica HOM05D007778 ORTHO05D009819 1.3e-25 120.6 138 50.0
arahy.Tifrunner.gnm1.ann1.0X1LIN Arachis hypogaea HOM05D007778 ORTHO05D009819 3.0e-25 119.4 159 44.7
arahy.Tifrunner.gnm1.ann1.U19ACF Arachis hypogaea HOM05D007778 ORTHO05D009819 3.9e-25 119.0 159 44.7
EL10Ac4g08900 Beta vulgaris HOM05D007778 ORTHO05D009819 5.0e-25 118.6 183 43.7
MBI06_g15669_MAGBIO Magnolia biondii HOM05D007778 ORTHO05D009819 2.5e-24 116.3 146 44.5
PSO782G0382 Papaver somniferum HOM05D007778 ORTHO05D009819 2.5e-24 116.3 102 53.9
Lsat_1_v5_gn_4_110701 Lactuca sativa HOM05D007778 ORTHO05D009819 3.3e-24 115.9 75 70.7
Gohir.D07G082800 Gossypium hirsutum HOM05D007778 ORTHO05D009819 7.3e-24 114.8 108 53.7
Gorai.001G088400 Gossypium raimondii HOM05D007778 ORTHO05D009819 7.3e-24 114.8 108 53.7
Actinidia04816 Actinidia chinensis HOM05D001693 ORTHO05D001588 9.5e-24 114.4 89 60.7
Nitab4.5_0007160g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 9.5e-24 114.4 95 56.8
Psat4g221240 Pisum sativum HOM05D007778 ORTHO05D009819 9.5e-24 114.4 151 43.7
Gohir.A07G078000 Gossypium hirsutum HOM05D007778 ORTHO05D009819 1.6e-23 113.6 108 52.8
Nitab4.5_0001485g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 2.1e-23 113.2 88 56.8
PSO063G5463 Papaver somniferum HOM05D007778 ORTHO05D009819 3.6e-23 112.5 112 50.9
Migut.D01632 Erythranthe guttata HOM05D007778 ORTHO05D009819 6.2e-23 111.7 102 53.9
PGSC0003DMG400024679 Solanum tuberosum HOM05D007778 ORTHO05D009819 1.4e-22 110.5 85 57.6
CAN.G1228.14 Capsicum annuum HOM05D007778 ORTHO05D009819 1.8e-22 110.2 82 61.0
Oeu032099.1 Olea europaea HOM05D007778 ORTHO05D009819 5.2e-22 108.6 85 60.0
CDE05G2207 Ceratophyllum demersum HOM05D007778 ORTHO05D009819 6.8e-22 108.2 133 48.1
CsaV3_5G020220 Cucumis sativus L. HOM05D007778 ORTHO05D009819 1.2e-21 107.5 112 49.1
Duzib133G0400 Durio zibethinus HOM05D007778 ORTHO05D009819 1.5e-21 107.1 143 44.1
HanXRQChr09g0270391 Helianthus annuus HOM05D007778 ORTHO05D009819 1.5e-21 107.1 75 65.3
ClCG01G008280 Citrullus lanatus HOM05D007778 ORTHO05D009819 3.4e-21 105.9 112 48.2
SalBow7G4718 Salvia bowleyana HOM05D007778 ORTHO05D009819 4.4e-21 105.5 82 56.1
CANSAT78G1962 Cannabis sativa HOM05D007778 ORTHO05D009819 1.3e-20 104.0 154 40.3
Lj5P133T80 Lonicera japonica HOM05D007778 ORTHO05D009819 1.7e-20 103.6 78 65.4
CSS0000221 Camellia sinensis var. sinensis HOM05D007778 ORTHO05D009819 2.2e-20 103.2 140 42.9
Eucgr.C02480 Eucalyptus grandis HOM05D007778 ORTHO05D009819 2.2e-20 103.2 118 42.4
MELO3C025069.2 Cucumis melo HOM05D007778 ORTHO05D009819 3.7e-20 102.4 111 47.7
Eucgr.C02546 Eucalyptus grandis HOM05D007778 ORTHO05D009819 3.7e-20 102.4 118 41.5
Sed0002702 Sechium edule HOM05D007778 ORTHO05D009819 4.9e-20 102.1 84 57.1
Eucgr.I00539 Eucalyptus grandis HOM05D007778 ORTHO05D009819 2.4e-19 99.8 108 44.4
unitig_736.g22611 Utricularia gibba HOM05D007778 ORTHO05D009819 3.2e-19 99.4 79 59.5
Os04g0523000 Oryza sativa ssp. japonica HOM05D007778 ORTHO05D009819 9.2e-19 97.8 82 53.7
Zm00001eb077030 Zea mays HOM05D007778 ORTHO05D009819 1.3e-17 94.0 79 53.2
FAN26G2882 Fragaria x ananassa HOM05D007778 ORTHO05D009819 1.4e-14 84.0 66 60.6
ATR0618G409 Amborella trichopoda HOM05D007778 ORTHO05D009819 1.8e-14 83.6 111 36.9
Rhsim08G0144800 Rhododendron simsii HOM05D007778 ORTHO05D009819 3.1e-14 82.8 78 52.6
BcaB05g24166 Brassica carinata HOM05D007778 ORTHO05D009819 1.4e-11 73.9 73 47.9
BcaC03g14741 Brassica carinata HOM05D007778 ORTHO05D009819 2.4e-11 73.2 73 49.3
THA.LOC104823842 Tarenaya hassleriana HOM05D007778 ORTHO05D009819 2.4e-11 73.2 73 46.6
Sp5g21340 Schrenkiella parvula HOM05D007778 ORTHO05D009819 4.1e-11 72.4 73 47.9
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 5.4e-11 72.0 73 46.6
BraA02t06417Z Brassica rapa HOM05D003087 ORTHO05D009819 5.4e-11 72.0 73 46.6
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 7.1e-11 71.6 73 47.9
CARHR144520 Cardamine hirsuta HOM05D007778 ORTHO05D009819 2.7e-10 69.7 73 45.2
CAN.G533.5 Capsicum annuum HOM05D007778 ORTHO05D009819 2.5e-08 63.2 49 59.2
GSVIVG01000799001 Vitis vinifera HOM05D007778 ORTHO05D009819 3.3e-08 62.8 38 76.3
Aa31LG9G9260 Aethionema arabicum HOM05D004209 ORTHO05D004970 4.3e-08 62.4 128 25.8
Carub.0006s3313 Capsella rubella HOM05D004209 ORTHO05D004970 2.8e-07 59.7 128 25.0
Thhalv10028939m.g Eutrema salsugineum HOM05D004209 ORTHO05D004970 4.7e-07 58.9 128 25.0
Sp6g03810 Schrenkiella parvula HOM05D004209 ORTHO05D004970 4.7e-07 58.9 128 25.0
Carub.0007s2015 Capsella rubella HOM05D004209 ORTHO05D004970 1.1e-06 57.8 66 40.9
Gohir.D05G170500 Gossypium hirsutum HOM05D004209 ORTHO05D004970 1.1e-06 57.8 85 32.9
Gorai.009G175700 Gossypium raimondii HOM05D004209 ORTHO05D004970 1.1e-06 57.8 85 32.9
DCAR_028152 Daucus carota HOM05D004209 ORTHO05D004970 1.4e-06 57.4 67 38.8
AL7G32830 Arabidopsis lyrata HOM05D004209 ORTHO05D004970 1.8e-06 57.0 66 39.4
AT4G05180 Arabidopsis thaliana HOM05D004209 ORTHO05D004970 1.8e-06 57.0 128 23.4
AT4G21280 Arabidopsis thaliana HOM05D004209 ORTHO05D004970 1.8e-06 57.0 127 26.0
Migut.M01264 Erythranthe guttata HOM05D004209 ORTHO05D004970 1.8e-06 57.0 128 26.6
BcaB01g01890 Brassica carinata HOM05D004209 ORTHO05D004970 2.4e-06 56.6 67 37.3
Ciclev10016525m.g Citrus clementina HOM05D004209 ORTHO05D004970 2.4e-06 56.6 80 36.2
FAN21G1744 Fragaria x ananassa HOM05D004209 ORTHO05D004970 2.4e-06 56.6 67 38.8
FAN25G2308 Fragaria x ananassa HOM05D004209 ORTHO05D004970 2.4e-06 56.6 67 38.8
Gohir.A05G167500 Gossypium hirsutum HOM05D004209 ORTHO05D004970 2.4e-06 56.6 85 32.9
Thhalv10026172m.g Eutrema salsugineum HOM05D004209 ORTHO05D004970 3.1e-06 56.2 66 39.4
Glyma.07G112000 Glycine max HOM05D004209 ORTHO05D004970 3.1e-06 56.2 85 34.1
Hma1.2p1_1682F.1_g297320 Hydrangea macrophylla HOM05D004209 ORTHO05D004970 3.1e-06 56.2 128 25.0
PSO210G5932 Papaver somniferum HOM05D004209 ORTHO05D004970 3.1e-06 56.2 86 30.2
Lsat_1_v5_gn_1_123241 Lactuca sativa HOM05D004209 ORTHO05D004970 4.0e-06 55.8 67 37.3
Nitab4.5_0003738g0060 Nicotiana tabacum HOM05D004209 ORTHO05D004970 4.0e-06 55.8 80 32.5
PSO832G1281 Papaver somniferum HOM05D004209 ORTHO05D004970 4.0e-06 55.8 86 30.2
AL6G48780 Arabidopsis lyrata HOM05D004209 ORTHO05D004970 5.2e-06 55.5 67 35.8
MSTRG.13163 Avicennia marina HOM05D004209 ORTHO05D004970 5.2e-06 55.5 128 25.8
BcaC04g21382 Brassica carinata HOM05D004209 ORTHO05D004970 5.2e-06 55.5 67 35.8
A09p25550 Brassica napus HOM05D004209 ORTHO05D004970 5.2e-06 55.5 67 35.8
C09p32460 Brassica napus HOM05D004209 ORTHO05D004970 5.2e-06 55.5 67 35.8
BraA09t38130Z Brassica rapa HOM05D004209 ORTHO05D004970 5.2e-06 55.5 67 35.8
Oeu030990.2 Olea europaea HOM05D004209 ORTHO05D004970 5.2e-06 55.5 68 35.3
Sabra11G0024700 Salix brachista HOM05D004209 ORTHO05D004970 5.2e-06 55.5 84 33.3
Duzib192G0389 Durio zibethinus HOM05D004209 ORTHO05D004970 6.8e-06 55.1 85 31.8
Lj3g0019605 Lotus japonicus HOM05D004209 ORTHO05D004970 6.8e-06 55.1 128 23.4
Lalb_Chr13g0290461 Lupinus albus HOM05D004209 ORTHO05D004970 6.8e-06 55.1 86 31.4
Sp7g19360 Schrenkiella parvula HOM05D004209 ORTHO05D004970 6.8e-06 55.1 66 37.9
SMO171G0022 Selaginella moellendorffii HOM05D004209 ORTHO05D004970 6.8e-06 55.1 67 35.8
THA.LOC104812569 Tarenaya hassleriana HOM05D004209 ORTHO05D004970 6.8e-06 55.1 86 30.2
COL.COLO4_31686 Corchorus olitorius HOM05D004209 ORTHO05D004970 8.9e-06 54.7 84 34.5
Sabra11G0018800 Salix brachista HOM05D004209 ORTHO05D004970 8.9e-06 54.7 128 25.0


User provided reference genes

Program Settings