Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 0.0e+00 1326.6 1210 100.0
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 0.0e+00 1109.4 1043 87.0
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 3.1e-269 932.6 962 77.3
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 2.9e-259 899.4 1058 67.7
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 5.8e-207 725.7 1027 47.1
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 5.5e-197 692.6 970 47.1
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 7.9e-196 688.7 1033 47.4
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 1.6e-193 681.0 965 58.8
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 1.5e-191 674.5 962 47.1
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 2.2e-190 670.6 945 54.6
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 1.4e-189 667.9 962 50.4
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 4.2e-189 666.4 973 45.8
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 5.5e-189 666.0 891 50.8
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 1.1e-186 658.3 965 51.1
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 5.7e-186 656.0 1032 51.5
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 1.3e-185 654.8 966 56.9
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 1.7e-185 654.4 953 59.1
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 1.3e-182 644.8 954 43.5
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 1.0e-179 635.2 966 48.4
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 1.5e-178 631.3 963 46.0
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 2.6e-178 630.6 964 53.9
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 1.2e-175 621.7 963 47.6
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 9.4e-173 612.1 614 64.7
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 1.6e-167 594.7 652 57.1
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 7.2e-165 585.9 955 45.7
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 2.0e-162 577.8 951 41.9
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 9.8e-162 575.5 951 45.3
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 1.3e-161 575.1 997 50.9
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 1.6e-156 558.1 964 42.5
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 3.0e-155 553.9 651 55.6
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 1.2e-154 552.0 874 44.5
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 1.2e-154 552.0 658 54.6
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 1.3e-153 548.5 962 50.0
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 1.6e-151 541.6 957 48.6
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 3.5e-151 540.4 988 43.3
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 1.0e-150 538.9 991 52.9
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 3.3e-149 533.9 649 44.1
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 2.1e-148 531.2 955 44.8
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 8.0e-148 529.3 643 43.2
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 3.0e-147 527.3 662 53.6
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 2.0e-146 524.6 643 42.6
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 2.9e-145 520.8 640 45.3
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 6.4e-145 519.6 643 42.8
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 5.4e-144 516.5 644 50.5
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 1.3e-142 511.9 887 39.9
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 4.3e-141 506.9 640 43.1
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 1.2e-140 505.4 652 50.6
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 1.6e-140 505.0 643 56.3
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 1.2e-138 498.8 644 48.4
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 1.5e-138 498.4 661 46.3
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 2.6e-138 497.7 962 37.9
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 1.3e-137 495.4 964 42.0
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 3.7e-137 493.8 950 39.7
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 9.2e-136 489.2 956 35.0
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 1.2e-135 488.8 991 46.1
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 4.6e-135 486.9 966 41.3
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 6.6e-134 483.0 986 41.0
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 7.3e-133 479.6 958 40.1
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 4.7e-132 476.9 955 52.5
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 8.1e-132 476.1 989 39.2
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 8.1e-132 476.1 960 40.6
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 8.9e-131 472.6 649 49.3
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 3.7e-129 467.2 643 47.6
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 4.9e-129 466.8 950 40.0
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 1.9e-128 464.9 954 39.8
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 2.4e-128 464.5 653 52.4
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 3.2e-128 464.2 966 37.7
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 4.1e-128 463.8 653 51.5
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 1.5e-125 455.3 641 51.0
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 1.2e-122 445.7 565 55.4
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 2.6e-122 444.5 972 38.8
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 8.4e-121 439.5 964 37.9
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 2.4e-120 438.0 627 45.6
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.2e-119 435.6 613 54.6
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 2.1e-119 434.9 627 45.1
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 2.7e-119 434.5 627 45.1
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 3.4e-114 417.5 955 33.6
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 7.3e-109 399.8 874 41.1
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 1.8e-107 395.2 875 36.8
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 1.7e-102 378.6 1144 26.6
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 5.1e-102 377.1 987 37.2
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 6.2e-100 370.2 492 55.5
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 5.6e-93 347.1 630 41.6
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.7e-89 335.5 651 42.4
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 4.2e-88 330.9 353 64.0
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.1e-87 328.6 346 69.1
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 3.5e-87 327.8 664 31.8
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 3.3e-85 321.2 547 33.8
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 5.9e-82 310.5 958 25.3
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 4.6e-79 300.8 227 63.4
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 8.7e-78 296.6 453 43.7
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 2.8e-76 291.6 644 42.7
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 4.1e-75 287.7 453 42.8
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 1.3e-73 282.7 258 55.0
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.8e-70 272.3 242 57.0
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 5.7e-69 267.3 651 29.2
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 8.2e-60 236.9 199 58.3
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 1.7e-57 229.2 413 51.8
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 1.5e-56 226.1 203 56.2
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 8.0e-55 220.3 179 59.8
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.5e-32 146.4 187 43.3
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 9.5e-32 143.7 187 42.8
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 6.1e-31 141.0 102 61.8
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 5.6e-24 117.9 193 39.4
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 5.2e-22 111.3 246 32.1
Glyma.18G108202 Glycine max HOM05D006569 ORTHO05D007515 7.5e-21 107.5 146 45.2
Glyma.08G319450 Glycine max HOM05D006569 ORTHO05D007515 8.6e-17 94.0 87 54.0
SEGI_26115 Sequoiadendron giganteum HOM05D006819 ORTHO05D008763 4.3e-16 91.7 189 31.7
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 2.8e-15 89.0 88 46.6
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 4.4e-13 81.6 147 36.1
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 4.4e-13 81.6 198 31.3
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 8.3e-12 77.4 147 32.7
Ciclev10024942m.g Citrus clementina HOM05D006819 ORTHO05D008763 9.2e-11 73.9 176 29.5
C06p08050 Brassica napus HOM05D006819 ORTHO05D008763 2.3e-09 69.3 175 26.3
BolC6t35888H Brassica oleracea HOM05D006819 ORTHO05D008763 2.3e-09 69.3 175 26.3
TWI18G0691 Tripterygium wilfordii HOM05D006819 ORTHO05D008763 3.0e-09 68.9 172 29.1
BraA06t23391Z Brassica rapa HOM05D006819 ORTHO05D008763 3.9e-09 68.6 177 26.0
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 3.9e-09 68.6 236 23.7
Sed0026792 Sechium edule HOM05D006819 ORTHO05D008763 3.9e-09 68.6 213 24.4
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 6.6e-09 67.8 152 28.9
BcaC08g43437 Brassica carinata HOM05D006819 ORTHO05D008763 8.6e-09 67.4 175 25.7
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 1.1e-08 67.0 177 24.9
A06p01730 Brassica napus HOM05D006819 ORTHO05D008763 1.1e-08 67.0 177 25.4
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.1e-08 67.0 197 23.4
Haze_16531 Corylus avellana HOM05D006819 ORTHO05D008763 1.1e-08 67.0 177 26.0
Cfa001984 Carpinus fangiana HOM05D006819 ORTHO05D008763 1.9e-08 66.2 177 26.0
HanXRQChr16g0524351 Helianthus annuus HOM05D006569 ORTHO05D007515 3.3e-08 65.5 92 37.0
FAN09G4849 Fragaria x ananassa HOM05D006569 ORTHO05D007515 7.3e-08 64.3 121 34.7
CiPaw.02G155800 Carya illinoinensis HOM05D006819 ORTHO05D008763 1.2e-07 63.5 184 26.6
SalBow2G2822 Salvia bowleyana HOM05D006819 ORTHO05D008763 1.6e-07 63.2 157 25.5
A10p20720 Brassica napus HOM05D007340 ORTHO05D008979 2.1e-07 62.8 124 32.3
C09p57580 Brassica napus HOM05D007340 ORTHO05D008979 2.1e-07 62.8 123 30.1
BolC9t58627H Brassica oleracea HOM05D007340 ORTHO05D008979 2.1e-07 62.8 123 30.1
CSS0002572 Camellia sinensis var. sinensis HOM05D006819 ORTHO05D008763 2.1e-07 62.8 168 25.0
CSS0026240 Camellia sinensis var. sinensis HOM05D006819 ORTHO05D008763 2.1e-07 62.8 173 24.9
COL.COLO4_12924 Corchorus olitorius HOM05D006819 ORTHO05D008763 2.1e-07 62.8 171 26.3
FAN14G2986 Fragaria x ananassa HOM05D006819 ORTHO05D008763 2.1e-07 62.8 159 25.8
QL05p028543 Quercus lobata HOM05D006819 ORTHO05D008763 2.1e-07 62.8 184 27.7
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 2.8e-07 62.4 214 24.8
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 2.8e-07 62.4 169 26.6
MELO3C017894.2 Cucumis melo HOM05D006819 ORTHO05D008763 3.6e-07 62.0 174 25.3
Sabra02G0034700 Salix brachista HOM05D017826 ORTHO05D003288 3.6e-07 62.0 151 29.1
Carub.0001s4161 Capsella rubella HOM05D006819 ORTHO05D008763 6.2e-07 61.2 169 26.6
CAN.G569.38 Capsicum annuum HOM05D007956 ORTHO05D010152 8.1e-07 60.8 179 24.6
Lsat_1_v5_gn_1_46480 Lactuca sativa HOM05D001126 ORTHO05D000991 8.1e-07 60.8 84 39.3
Duzib235G1541 Durio zibethinus HOM05D006819 ORTHO05D008763 1.1e-06 60.5 154 29.2
PGSC0003DMG400002071 Solanum tuberosum HOM05D007956 ORTHO05D010152 1.1e-06 60.5 194 23.2
Eucgr.H03429 Eucalyptus grandis HOM05D000424 ORTHO05D000355 1.8e-06 59.7 152 27.6
DCAR_025499 Daucus carota HOM05D006819 ORTHO05D008763 2.3e-06 59.3 172 26.7
Dinv30584 Davidia involucrata HOM05D006819 ORTHO05D008763 2.3e-06 59.3 177 24.3
MD17G1208200 Malus domestica HOM05D006819 ORTHO05D008763 2.3e-06 59.3 248 21.8
Solyc02g080170.1 Solanum lycopersicum HOM05D007956 ORTHO05D010152 2.3e-06 59.3 198 22.2
Nn8g39431 Nelumbo nucifera HOM05D006819 ORTHO05D008763 3.1e-06 58.9 157 26.8
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 4.0e-06 58.5 205 24.4
AagrBONN_evm.TU.Sc2ySwM_369.597 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.2e-06 58.2 212 25.5
VMungo1215G2887 Vigna mungo HOM05D000879 ORTHO05D002043 5.2e-06 58.2 181 23.2
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 6.8e-06 57.8 197 23.9
Thecc.06G069300 Theobroma cacao HOM05D006819 ORTHO05D008763 6.8e-06 57.8 127 28.3
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 6.8e-06 57.8 301 21.6
Carub.0008s2268 Capsella rubella HOM05D005764 ORTHO05D006600 8.9e-06 57.4 145 29.0


User provided reference genes

Program Settings