Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 0.0e+00 1328.9 694 100.0
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 0.0e+00 1187.2 687 92.4
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 9.9e-268 926.8 708 71.2
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 5.8e-252 874.4 702 68.5
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 3.2e-242 842.0 718 63.2
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 8.7e-240 833.9 712 62.2
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 2.8e-238 828.9 609 78.0
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 4.3e-231 805.1 622 70.3
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 1.2e-228 797.0 704 60.2
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 7.9e-225 784.3 710 61.0
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 6.7e-224 781.2 602 65.3
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 3.1e-221 772.3 705 60.4
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 3.4e-220 768.8 711 58.2
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 1.7e-219 766.5 705 59.3
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 2.5e-218 762.7 669 59.9
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 2.7e-217 759.2 667 61.9
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 2.8e-214 749.2 604 65.4
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 6.3e-214 748.0 701 58.1
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 2.4e-213 746.1 569 66.1
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 4.1e-213 745.3 617 62.7
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 5.3e-213 745.0 679 59.6
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 5.9e-212 741.5 567 66.7
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 1.1e-210 737.3 709 57.3
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 2.1e-209 733.0 700 57.9
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 1.2e-207 727.2 571 65.0
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 5.7e-207 724.9 600 62.7
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 7.5e-207 724.5 739 54.5
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 3.5e-204 715.7 674 59.6
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 5.9e-204 714.9 504 72.4
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 8.5e-203 711.1 692 57.7
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 2.7e-201 706.1 691 56.6
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 2.3e-200 703.0 532 67.7
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 7.0e-197 691.4 576 59.4
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 3.5e-196 689.1 691 53.5
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 1.7e-195 686.8 582 60.8
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 4.2e-194 682.2 691 55.4
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 3.6e-193 679.1 567 62.3
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 1.3e-190 670.6 566 62.0
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 3.7e-190 669.1 648 55.4
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.0e-187 661.0 703 54.1
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 6.6e-187 658.3 500 67.4
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 2.5e-186 656.4 580 57.9
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 1.5e-183 647.1 603 54.6
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 1.4e-181 640.6 535 62.6
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 4.1e-181 639.0 595 55.8
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 5.9e-180 635.2 634 54.1
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 2.5e-178 629.8 562 57.5
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 7.3e-178 628.2 465 67.5
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 3.1e-176 622.9 539 63.8
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 4.4e-175 619.0 576 55.2
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 2.2e-174 616.7 621 54.6
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 1.5e-170 604.0 668 50.4
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 5.6e-170 602.1 577 53.9
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 7.3e-170 601.7 518 60.8
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.8e-168 597.0 670 50.9
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 5.2e-168 595.5 702 49.4
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 4.4e-167 592.4 733 49.9
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 4.4e-167 592.4 550 63.3
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 7.5e-167 591.7 487 62.4
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 1.1e-165 587.8 704 48.3
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 1.2e-161 574.3 428 69.2
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 1.2e-161 574.3 437 66.8
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 9.9e-159 564.7 566 51.6
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 1.7e-158 563.9 610 49.3
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 4.9e-158 562.4 644 50.2
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 9.2e-157 558.1 506 59.5
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 2.7e-156 556.6 429 66.7
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 2.3e-155 553.5 569 50.1
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 1.5e-154 550.8 605 47.8
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 3.1e-152 543.1 608 48.7
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 3.1e-152 543.1 608 48.7
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 4.0e-152 542.7 604 50.0
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 6.9e-152 542.0 568 49.8
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 9.0e-152 541.6 536 52.6
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 1.5e-151 540.8 509 56.0
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 1.7e-150 537.3 602 49.0
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 2.2e-150 537.0 558 50.9
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 2.1e-148 530.4 509 55.6
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 2.5e-146 523.5 438 60.0
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 9.6e-146 521.5 606 46.0
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 4.0e-144 516.2 634 47.0
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 2.3e-139 500.4 608 45.4
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 2.8e-137 493.4 483 54.7
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 1.8e-136 490.7 514 50.4
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 2.9e-134 483.4 534 49.1
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 4.8e-129 466.1 606 43.4
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 4.8e-129 466.1 507 50.1
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 1.8e-128 464.2 515 50.5
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 3.2e-125 453.4 419 57.0
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 7.9e-124 448.7 365 64.9
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 1.3e-123 448.0 611 43.0
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 4.2e-117 426.4 337 63.2
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 4.8e-113 412.9 361 57.9
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 1.4e-112 411.4 592 44.3
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 7.7e-111 405.6 593 42.5
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.1e-104 385.2 338 58.6
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 1.8e-104 384.4 541 43.3
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 2.9e-102 377.1 383 51.4
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 5.7e-98 362.8 298 62.1
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.6e-90 337.4 382 53.9
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 1.5e-85 321.6 284 63.7
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 7.2e-85 319.3 241 83.8
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 3.4e-82 310.5 221 88.2
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 2.0e-79 301.2 296 54.4
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 8.0e-76 289.3 214 70.6
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 1.5e-58 231.9 170 71.8
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 3.0e-54 217.6 257 59.1
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 1.4e-51 208.8 268 50.4
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 2.9e-25 121.3 99 66.7
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 3.0e-22 111.3 274 27.7
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 1.5e-21 109.0 271 28.4
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 4.3e-21 107.5 82 68.3
Lalb_Chr10g0092321 Lupinus albus HOM05D002617 ORTHO05D009035 1.5e-18 99.0 68 72.1
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.7e-17 95.5 69 63.8
Lalb_Chr10g0092301 Lupinus albus HOM05D002617 ORTHO05D009035 3.5e-15 87.8 54 70.4
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 2.6e-10 71.6 42 73.8
TAR629G3114 Trochodendron aralioides HOM05D004526 ORTHO05D002794 1.2e-07 62.8 37 73.0


User provided reference genes

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