Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 1.3e-76 289.7 142 100.0
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 2.3e-70 268.9 142 90.8
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 3.0e-70 268.5 142 91.5
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 5.6e-69 264.2 141 89.4
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 9.0e-67 256.9 142 85.9
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 1.5e-66 256.1 193 72.0
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 1.5e-66 256.1 193 72.0
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 1.5e-66 256.1 142 84.5
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 5.8e-66 254.2 142 82.4
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 4.9e-65 251.1 140 82.9
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 4.9e-65 251.1 142 82.4
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 1.1e-64 250.0 141 81.6
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 2.5e-64 248.8 142 81.7
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 2.5e-64 248.8 142 83.1
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 2.5e-64 248.8 142 81.7
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 4.2e-64 248.1 142 80.3
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 7.1e-64 247.3 142 80.3
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 7.1e-64 247.3 142 80.3
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 7.1e-64 247.3 142 81.0
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 9.3e-64 246.9 142 83.8
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 3.5e-63 245.0 142 81.0
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 6.0e-63 244.2 142 79.6
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 6.0e-63 244.2 142 77.5
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 7.9e-63 243.8 142 81.0
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.3e-62 243.0 142 81.7
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.9e-62 241.5 142 80.3
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 6.7e-62 240.7 142 80.3
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 6.7e-62 240.7 141 80.9
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 6.7e-62 240.7 142 76.1
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 6.7e-62 240.7 142 80.3
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 8.7e-62 240.4 142 78.9
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 1.1e-61 240.0 142 76.8
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.5e-61 239.6 142 78.9
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.5e-61 239.6 142 78.9
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 1.9e-61 239.2 142 76.8
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 4.3e-61 238.0 142 76.1
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.7e-61 237.7 142 77.5
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 5.7e-61 237.7 142 76.8
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 7.4e-61 237.3 141 78.0
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 9.7e-61 236.9 145 79.3
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 9.7e-61 236.9 142 76.8
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.3e-60 236.5 139 78.4
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.3e-60 236.5 142 76.1
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.3e-60 236.5 142 78.2
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 2.8e-60 235.3 143 78.3
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 3.7e-60 235.0 141 78.7
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 4.8e-60 234.6 142 76.8
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 4.8e-60 234.6 142 76.8
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 4.8e-60 234.6 142 78.2
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 8.2e-60 233.8 139 78.4
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 8.2e-60 233.8 142 74.6
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 8.2e-60 233.8 141 78.0
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 8.2e-60 233.8 142 78.2
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 8.2e-60 233.8 142 77.5
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.1e-59 233.4 139 78.4
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.4e-59 232.3 142 76.1
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 2.4e-59 232.3 142 77.5
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 4.1e-59 231.5 142 75.4
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 4.1e-59 231.5 142 75.4
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 6.9e-59 230.7 142 73.2
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 6.9e-59 230.7 141 75.9
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 9.0e-59 230.3 142 73.9
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.2e-58 229.9 142 76.1
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.2e-58 229.9 141 75.9
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 2.0e-58 229.2 142 72.5
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 2.0e-58 229.2 142 72.5
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 2.6e-58 228.8 142 73.2
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 4.5e-58 228.0 142 71.8
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 7.6e-58 227.3 142 74.6
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.0e-57 226.9 141 76.6
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 71.8
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 72.5
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 72.5
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 72.5
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 71.1
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 2.9e-57 225.3 163 68.7
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 71.8
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 72.5
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 71.8
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 71.8
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 71.8
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 72.5
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 6.5e-57 224.2 142 72.5
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 8.5e-57 223.8 142 71.8
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 8.5e-57 223.8 141 73.8
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 8.5e-57 223.8 141 78.0
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 72.5
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 72.5
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 72.5
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 1.4e-56 223.0 142 75.4
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.4e-56 223.0 138 76.1
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 2.5e-56 222.2 139 74.8
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 72.5
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 3.2e-56 221.9 141 73.8
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 3.2e-56 221.9 141 73.8
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 4.2e-56 221.5 141 73.8
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 71.8
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 71.8
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 5.5e-56 221.1 140 72.1
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 73.2
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 9.3e-56 220.3 170 64.7
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.2e-55 219.9 140 72.1
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 1.2e-55 219.9 140 73.6
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.7e-55 218.8 140 72.1
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 3.6e-55 218.4 135 76.3
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 4.6e-55 218.0 140 72.9
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 1.0e-54 216.9 140 72.9
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 1.8e-54 216.1 136 72.8
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 1.8e-54 216.1 141 72.3
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 2.3e-54 215.7 141 72.3
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 3.9e-54 214.9 140 70.0
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 5.1e-54 214.5 142 70.4
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 6.7e-54 214.2 142 68.3
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 6.7e-54 214.2 142 71.1
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 1.5e-53 213.0 142 71.1
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 1.5e-53 213.0 142 71.8
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 1.9e-53 212.6 141 70.9
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 5.7e-53 211.1 137 70.8
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 7.4e-53 210.7 142 69.7
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 7.4e-53 210.7 142 67.6
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 1.3e-52 209.9 191 54.5
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 2.2e-52 209.1 142 66.9
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 3.7e-52 208.4 138 71.0
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 3.7e-52 208.4 138 71.0
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 6.3e-52 207.6 140 67.9
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 2.4e-51 205.7 143 68.5
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 2.0e-50 202.6 117 82.1
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 2.0e-50 202.6 142 71.8
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 7.7e-50 200.7 142 69.0
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 1.7e-49 199.5 140 67.9
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 1.7e-49 199.5 132 70.5
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 3.8e-49 198.4 135 66.7
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 3.8e-49 198.4 132 69.7
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 8.5e-49 197.2 142 66.9
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 5.5e-48 194.5 143 68.5
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 5.5e-48 194.5 157 61.1
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 7.2e-48 194.1 141 68.1
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 9.4e-48 193.7 175 57.7
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.2e-47 193.4 142 64.8
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.8e-46 189.5 142 64.8
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 1.8e-46 189.5 138 66.7
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 3.1e-43 178.7 141 63.1
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 1.7e-41 172.9 108 75.9
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 9.4e-40 167.2 139 60.4
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 1.6e-39 166.4 289 38.1
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 3.6e-39 165.2 126 63.5
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.7e-39 164.9 141 57.4
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 5.2e-38 161.4 136 56.6
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 1.1e-37 160.2 140 52.9
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 2.0e-37 159.5 136 55.9
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.7e-36 156.4 139 54.7
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.2e-36 156.0 139 54.7
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 2.0e-34 149.4 142 50.7
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 2.7e-31 139.0 125 52.8
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 4.8e-28 128.3 126 50.0
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 3.1e-27 125.6 78 73.1
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 2.2e-25 119.4 80 68.8
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 8.5e-25 117.5 80 67.5
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 6.1e-23 111.3 67 73.1
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.2e-21 107.1 109 50.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.2e-21 107.1 109 50.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.2e-21 107.1 109 50.5
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 2.8e-20 102.4 67 67.2
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 4.8e-20 101.7 87 58.6
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 3.1e-19 99.0 117 43.6
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 7.0e-19 97.8 115 50.4
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 2.7e-18 95.9 77 59.7
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 1.7e-17 93.2 121 43.0
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 5.0e-17 91.7 59 71.2
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 5.0e-17 91.7 59 71.2
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 2.5e-16 89.4 112 50.0
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 3.3e-16 89.0 77 53.2
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 2.8e-15 85.9 68 63.2
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 3.6e-15 85.5 68 61.8
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 5.7e-13 78.2 115 44.3
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.8e-11 73.2 40 72.5
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 4.1e-11 72.0 46 71.7
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 2.7e-10 69.3 42 76.2
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.5e-10 68.9 38 81.6
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 1.3e-09 67.0 105 38.1
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.5e-08 62.8 38 71.1
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 5.6e-08 61.6 47 61.7
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 5.6e-08 61.6 34 73.5
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 1.2e-07 60.5 34 70.6
Zm00001eb353660 Zea mays HOM05D003749 ORTHO05D004421 5.2e-06 55.1 70 41.4
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 8.9e-06 54.3 32 75.0


User provided reference genes

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