Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007908 Carpinus fangiana HOM05D007515 ORTHO05D009374 8.1e-59 230.3 127 100.0
Haze_14170 Corylus avellana HOM05D007515 ORTHO05D009374 1.3e-32 143.3 101 85.1
CiPaw.03G063100 Carya illinoinensis HOM05D007515 ORTHO05D009374 8.7e-29 130.6 101 69.3
Ciclev10013056m.g Citrus clementina HOM05D007515 ORTHO05D009374 3.9e-21 105.1 101 58.4
Atru.chr1.1654 Acer truncatum HOM05D007515 ORTHO05D009374 3.3e-20 102.1 101 56.4
GSVIVG01031005001 Vitis vinifera HOM05D007515 ORTHO05D009374 7.4e-20 100.9 101 56.4
QL12p016476 Quercus lobata HOM05D007515 ORTHO05D009374 4.1e-18 95.1 100 57.0
QL02p050960 Quercus lobata HOM05D007515 ORTHO05D009374 9.0e-18 94.0 100 56.0
RcHm_v2.0_Chr4g0422841 Rosa chinensis HOM05D007515 ORTHO05D009374 2.6e-17 92.4 101 53.5
Thecc.04G131400 Theobroma cacao HOM05D007515 ORTHO05D009374 5.9e-17 91.3 101 49.5
Nn4g23909 Nelumbo nucifera HOM05D007515 ORTHO05D009374 8.5e-16 87.4 101 50.5
Hma1.2p1_0075F.1_g039300 Hydrangea macrophylla HOM05D007515 ORTHO05D009374 1.1e-15 87.0 100 53.0
FAN12G0861 Fragaria x ananassa HOM05D007515 ORTHO05D009374 4.2e-15 85.1 110 48.2
FAN12G1919 Fragaria x ananassa HOM05D007515 ORTHO05D009374 4.2e-15 85.1 110 48.2
Duzib138G0915 Durio zibethinus HOM05D007515 ORTHO05D009374 5.5e-15 84.7 101 48.5
Manes.02G070000 Manihot esculenta HOM05D007515 ORTHO05D009374 5.5e-15 84.7 101 50.5
TAR622G1055 Trochodendron aralioides HOM05D007515 ORTHO05D009374 7.2e-15 84.3 101 47.5
Gohir.A11G164100 Gossypium hirsutum HOM05D007515 ORTHO05D009374 4.6e-14 81.6 101 49.5
FvH4_4g18360 Fragaria vesca HOM05D007515 ORTHO05D009374 1.0e-13 80.5 101 49.5
COL.COLO4_09352 Corchorus olitorius HOM05D007515 ORTHO05D009374 1.4e-13 80.1 101 48.5
Gohir.D11G170400 Gossypium hirsutum HOM05D007515 ORTHO05D009374 1.4e-13 80.1 101 48.5
Gorai.007G182300 Gossypium raimondii HOM05D007515 ORTHO05D009374 1.4e-13 80.1 101 48.5
Potri.017G116500 Populus trichocarpa HOM05D007515 ORTHO05D009374 1.8e-13 79.7 106 49.1
Rhsim09G0050100 Rhododendron simsii HOM05D007515 ORTHO05D009374 1.8e-13 79.7 101 44.6
Actinidia15892 Actinidia chinensis HOM05D007515 ORTHO05D009374 3.0e-13 79.0 101 44.6
Prupe.3G144700 Prunus persica HOM05D007515 ORTHO05D009374 6.7e-13 77.8 80 53.8
Sabra17G0096400 Salix brachista HOM05D007515 ORTHO05D009374 8.8e-13 77.4 101 50.5
MBI16_g28238_MAGBIO Magnolia biondii HOM05D007515 ORTHO05D009374 1.9e-12 76.3 104 45.2
Aqoxy3G00240 Aquilegia oxysepala HOM05D007515 ORTHO05D009374 3.3e-12 75.5 101 48.5
MD09G1254600 Malus domestica HOM05D007515 ORTHO05D009374 3.3e-12 75.5 102 53.9
PGR042G1312 Punica granatum HOM05D007515 ORTHO05D009374 3.7e-11 72.0 101 46.5
MSTRG.23581 Avicennia marina HOM05D007515 ORTHO05D009374 8.2e-11 70.9 106 44.3
Sed0014058 Sechium edule HOM05D007515 ORTHO05D009374 1.4e-10 70.1 101 47.5
HanXRQChr14g0440481 Helianthus annuus HOM05D007515 ORTHO05D009374 1.8e-10 69.7 101 46.5
Nitab4.5_0000912g0070 Nicotiana tabacum HOM05D007515 ORTHO05D009374 3.1e-10 68.9 103 42.7
Nitab4.5_0007990g0020 Nicotiana tabacum HOM05D007515 ORTHO05D009374 6.9e-10 67.8 103 41.7
TAR622G0795 Trochodendron aralioides HOM05D007515 ORTHO05D009374 6.9e-10 67.8 88 43.2
Eucgr.J01508 Eucalyptus grandis HOM05D007515 ORTHO05D009374 1.5e-09 66.6 101 42.6
Oeu039735.1 Olea europaea HOM05D007515 ORTHO05D009374 2.0e-09 66.2 95 43.2
Rhsim08G0082900 Rhododendron simsii HOM05D007515 ORTHO05D009374 3.4e-09 65.5 105 40.0
Cc07_g08700 Coffea canephora HOM05D007515 ORTHO05D009374 1.3e-08 63.5 104 50.0
Phvul.004G062000 Phaseolus vulgaris HOM05D007515 ORTHO05D009374 1.3e-08 63.5 102 44.1
Cpa.g.sc170.54 Carica papaya HOM05D007515 ORTHO05D009374 2.2e-08 62.8 137 36.5
unitig_736.g22559 Utricularia gibba HOM05D007515 ORTHO05D009374 3.8e-08 62.0 104 39.4
DCAR_025907 Daucus carota HOM05D007515 ORTHO05D009374 5.0e-08 61.6 101 41.6
Lalb_Chr02g0158161 Lupinus albus HOM05D007515 ORTHO05D009374 8.5e-08 60.8 101 44.6
Peaxi162Scf00394g00816 Petunia axillaris HOM05D007515 ORTHO05D009374 8.5e-08 60.8 101 47.5
Solyc02g086170.3 Solanum lycopersicum HOM05D007515 ORTHO05D009374 8.5e-08 60.8 112 38.4
Lsat_1_v5_gn_2_79341 Lactuca sativa HOM05D007515 ORTHO05D009374 1.1e-07 60.5 101 41.6
MELO3C008145.2 Cucumis melo HOM05D007515 ORTHO05D009374 1.4e-07 60.1 101 41.6
Sopen02g030860 Solanum pennellii HOM05D007515 ORTHO05D009374 1.4e-07 60.1 104 41.3
VMungo0464G1380 Vigna mungo HOM05D007515 ORTHO05D009374 1.4e-07 60.1 102 42.2
CsaV3_2G033760 Cucumis sativus L. HOM05D007515 ORTHO05D009374 3.2e-07 58.9 102 39.2
PGSC0003DMG400026389 Solanum tuberosum HOM05D007515 ORTHO05D009374 3.2e-07 58.9 106 38.7
Aa31LG11G13450 Aethionema arabicum HOM05D007515 ORTHO05D009374 4.2e-07 58.5 101 42.6
Os01g0689600 Oryza sativa ssp. japonica HOM05D007515 ORTHO05D009374 4.2e-07 58.5 101 39.6
CDE12G0697 Ceratophyllum demersum HOM05D007515 ORTHO05D009374 2.1e-06 56.2 101 38.6
Glyma.13G044900 Glycine max HOM05D007515 ORTHO05D009374 2.1e-06 56.2 101 47.5
Hund16163 Selenicereus undatus HOM05D007515 ORTHO05D009374 2.1e-06 56.2 101 37.6
Glyma.19G050400 Glycine max HOM05D007515 ORTHO05D009374 3.6e-06 55.5 102 47.1
Migut.H00225 Erythranthe guttata HOM05D007515 ORTHO05D009374 4.7e-06 55.1 87 37.9
ECA238G4180 Erigeron canadensis HOM05D007515 ORTHO05D009374 6.1e-06 54.7 101 37.6
vmacro18070 Vaccinium macrocarpon HOM05D007515 ORTHO05D009374 6.1e-06 54.7 81 40.7


User provided reference genes

Program Settings