Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007904 Carpinus fangiana HOM05D000072 ORTHO05D000318 7.1e-86 320.5 151 100.0
Haze_14174 Corylus avellana HOM05D000072 ORTHO05D000026 1.9e-62 242.7 177 69.5
TAR622G0084 Trochodendron aralioides HOM05D000072 ORTHO05D001031 9.1e-33 144.1 177 44.1
Oeu016631.1 Olea europaea HOM05D000072 ORTHO05D000026 6.5e-31 137.9 165 42.4
TAR622G1060 Trochodendron aralioides HOM05D000072 ORTHO05D001031 3.3e-19 99.0 90 55.6
TAR371G0639 Trochodendron aralioides HOM05D000072 ORTHO05D000026 3.7e-18 95.5 179 34.6
Manes.01G112301 Manihot esculenta HOM05D000260 ORTHO05D000318 7.7e-16 87.8 182 33.0
TAR433G0004 Trochodendron aralioides HOM05D000260 ORTHO05D000318 1.7e-15 86.7 173 34.7
Eucgr.F02806 Eucalyptus grandis HOM05D000072 ORTHO05D000026 2.2e-15 86.3 184 32.6
Eucgr.F02517 Eucalyptus grandis HOM05D000260 ORTHO05D000318 2.9e-15 85.9 173 32.4
TAR371G0287 Trochodendron aralioides HOM05D000072 ORTHO05D000026 5.0e-15 85.1 163 35.6
Oeu010771.2 Olea europaea HOM05D000260 ORTHO05D000318 1.1e-14 84.0 181 31.5
Actinidia15897 Actinidia chinensis HOM05D000260 ORTHO05D000318 4.2e-14 82.0 187 31.0
Actinidia36338 Actinidia chinensis HOM05D000260 ORTHO05D000318 4.2e-14 82.0 186 28.0
Eucgr.F02802 Eucalyptus grandis HOM05D000072 ORTHO05D000026 4.2e-14 82.0 183 31.7
Prupe.3G146200 Prunus persica HOM05D000072 ORTHO05D000026 4.2e-14 82.0 177 28.8
Thecc.04G130800 Theobroma cacao HOM05D000072 ORTHO05D000026 7.2e-14 81.3 178 28.7
Gorai.007G182600 Gossypium raimondii HOM05D000260 ORTHO05D000318 9.4e-14 80.9 181 29.3
Eucgr.L03193 Eucalyptus grandis HOM05D000260 ORTHO05D000318 6.1e-13 78.2 176 33.0
SalBow7G0188 Salvia bowleyana HOM05D000013 ORTHO05D000011 1.4e-12 77.0 180 32.2
Actinidia36337 Actinidia chinensis HOM05D000260 ORTHO05D000318 1.8e-12 76.6 184 30.4
Cfa023329 Carpinus fangiana HOM05D000260 ORTHO05D000318 2.3e-12 76.3 183 28.4
Prupe.3G146500 Prunus persica HOM05D000260 ORTHO05D000318 2.3e-12 76.3 186 30.6
Rhsim08G0083500 Rhododendron simsii HOM05D000260 ORTHO05D000318 3.0e-12 75.9 186 29.6
Eucgr.L01207 Eucalyptus grandis HOM05D000072 ORTHO05D000026 4.0e-12 75.5 186 30.1
Rhsim10G0069600 Rhododendron simsii HOM05D000260 ORTHO05D000318 4.0e-12 75.5 190 30.5
SGA_v2.0_scaffold49G18115 Striga asiatica HOM05D000260 ORTHO05D000318 4.0e-12 75.5 192 32.3
DCAR_025904 Daucus carota HOM05D002670 ORTHO05D003079 5.2e-12 75.1 182 29.7
Eucgr.A00693 Eucalyptus grandis HOM05D000072 ORTHO05D000026 6.7e-12 74.7 139 38.1
Oeu016632.1 Olea europaea HOM05D000072 ORTHO05D000026 6.7e-12 74.7 189 32.3
Rhsim08G0091700 Rhododendron simsii HOM05D000072 ORTHO05D000026 6.7e-12 74.7 187 29.4
COL.COLO4_09357 Corchorus olitorius HOM05D000464 ORTHO05D000408 8.8e-12 74.3 191 30.4
COL.COLO4_09361 Corchorus olitorius HOM05D000260 ORTHO05D000318 8.8e-12 74.3 180 28.9
Gohir.D11G171600 Gossypium hirsutum HOM05D000260 ORTHO05D000318 8.8e-12 74.3 183 28.4
SalBow7G0478 Salvia bowleyana HOM05D000013 ORTHO05D000011 8.8e-12 74.3 182 31.3
Dinv34800 Davidia involucrata HOM05D000260 ORTHO05D000318 1.2e-11 73.9 180 29.4
Gohir.D11G171350 Gossypium hirsutum HOM05D000260 ORTHO05D000318 1.2e-11 73.9 183 28.4
MD00G1204100 Malus domestica HOM05D000260 ORTHO05D000318 1.5e-11 73.6 162 29.0
Eucgr.F02807 Eucalyptus grandis HOM05D000072 ORTHO05D000026 2.0e-11 73.2 182 30.2
Eucgr.L01204 Eucalyptus grandis HOM05D000072 ORTHO05D000026 2.0e-11 73.2 187 28.9
TPR.G36593 Trifolium pratense HOM05D000260 ORTHO05D000318 2.6e-11 72.8 191 26.7
Ciclev10011232m.g Citrus clementina HOM05D000072 ORTHO05D000026 3.3e-11 72.4 196 26.5
Dinv34807 Davidia involucrata HOM05D000072 ORTHO05D000026 3.3e-11 72.4 185 30.8
FAN05G2194 Fragaria x ananassa HOM05D000260 ORTHO05D000318 3.3e-11 72.4 180 24.4
FAN09G3772 Fragaria x ananassa HOM05D001455 ORTHO05D001587 3.3e-11 72.4 180 24.4
Oeu036852.1 Olea europaea HOM05D000260 ORTHO05D000318 4.4e-11 72.0 182 30.2
Thecc.04G129700 Theobroma cacao HOM05D000260 ORTHO05D000318 4.4e-11 72.0 188 28.7
HanXRQChr11g0325031 Helianthus annuus HOM05D000072 ORTHO05D000318 5.7e-11 71.6 190 27.4
PGSC0003DMG402005729 Solanum tuberosum HOM05D000260 ORTHO05D000318 5.7e-11 71.6 180 30.6
Cpa.g.sc170.40 Carica papaya HOM05D000260 ORTHO05D000318 7.5e-11 71.2 185 28.1
CiPaw.03G063600 Carya illinoinensis HOM05D000260 ORTHO05D000318 7.5e-11 71.2 184 29.3
PGSC0003DMG400005730 Solanum tuberosum HOM05D000072 ORTHO05D000026 7.5e-11 71.2 180 30.0
FAN14G5280 Fragaria x ananassa HOM05D001455 ORTHO05D001587 9.7e-11 70.9 155 27.7
Prupe.3G146000 Prunus persica HOM05D000072 ORTHO05D000318 9.7e-11 70.9 134 32.8
Eucgr.F02516 Eucalyptus grandis HOM05D000072 ORTHO05D000026 1.3e-10 70.5 200 27.5
Hma1.2p1_0075F.1_g039260 Hydrangea macrophylla HOM05D000260 ORTHO05D000318 1.3e-10 70.5 182 29.1
Hma1.2p1_0976F.1_g243296 Hydrangea macrophylla HOM05D000260 ORTHO05D000318 1.3e-10 70.5 182 29.1
Potri.017G118250 Populus trichocarpa HOM05D000260 ORTHO05D000318 1.3e-10 70.5 186 25.8
TAR371G0127 Trochodendron aralioides HOM05D000260 ORTHO05D000318 1.3e-10 70.5 91 44.0
VMungo1383G0920 Vigna mungo HOM05D000260 ORTHO05D000318 1.3e-10 70.5 184 33.2
Cfa023331 Carpinus fangiana HOM05D000260 ORTHO05D000318 1.7e-10 70.1 185 27.0
Potri.017G116900 Populus trichocarpa HOM05D000072 ORTHO05D000026 2.2e-10 69.7 195 29.2
Potri.017G117010 Populus trichocarpa HOM05D000072 ORTHO05D000026 2.2e-10 69.7 194 29.4
SalBow5G4438 Salvia bowleyana HOM05D000260 ORTHO05D000318 2.2e-10 69.7 196 28.1
Atru.chr1.1005 Acer truncatum HOM05D000072 ORTHO05D000026 3.7e-10 68.9 190 28.9
Dinv28127 Davidia involucrata HOM05D000072 ORTHO05D000026 4.8e-10 68.6 180 29.4
Eucgr.F02102 Eucalyptus grandis HOM05D000260 ORTHO05D000318 4.8e-10 68.6 195 26.2
Lj2C439T14 Lonicera japonica HOM05D000260 ORTHO05D000318 4.8e-10 68.6 176 26.1
MD06G1136200 Malus domestica HOM05D000260 ORTHO05D000318 4.8e-10 68.6 184 24.5
Haze_14164 Corylus avellana HOM05D000260 ORTHO05D000318 6.3e-10 68.2 180 26.7
Migut.H00231 Erythranthe guttata HOM05D000072 ORTHO05D000026 8.2e-10 67.8 188 28.2
Sabra17G0097400 Salix brachista HOM05D000260 ORTHO05D000318 8.2e-10 67.8 180 28.9
Haze_14182 Corylus avellana HOM05D000260 ORTHO05D000318 1.1e-09 67.4 191 28.8
Nn3g17918 Nelumbo nucifera HOM05D000072 ORTHO05D000026 1.1e-09 67.4 195 29.7
MD09G1255100 Malus domestica HOM05D000260 ORTHO05D000318 1.4e-09 67.0 187 25.7
Eucgr.F02104 Eucalyptus grandis HOM05D000260 ORTHO05D000318 1.8e-09 66.6 196 27.6
QL10p026182 Quercus lobata HOM05D000260 ORTHO05D000318 1.8e-09 66.6 180 27.2
RcHm_v2.0_Chr6g0273041 Rosa chinensis HOM05D000260 ORTHO05D000318 1.8e-09 66.6 187 28.9
Eucgr.L03194 Eucalyptus grandis HOM05D000260 ORTHO05D000318 2.4e-09 66.2 198 26.8
Gohir.A11G164300 Gossypium hirsutum HOM05D000260 ORTHO05D000318 2.4e-09 66.2 180 28.9
SHI22379 Sapria himalayana HOM05D000260 ORTHO05D000318 2.4e-09 66.2 186 26.9
Actinidia17643 Actinidia chinensis HOM05D000260 ORTHO05D000318 4.1e-09 65.5 188 26.1
ClCG11G007790 Citrullus lanatus HOM05D000260 ORTHO05D000318 4.1e-09 65.5 180 27.8
Duzib138G1503 Durio zibethinus HOM05D000260 ORTHO05D000318 4.1e-09 65.5 163 30.1
Cc07_g08590 Coffea canephora HOM05D000260 ORTHO05D000318 5.3e-09 65.1 180 23.3
COL.COLO4_09363 Corchorus olitorius HOM05D002670 ORTHO05D003079 5.3e-09 65.1 172 27.3
MD17G1247800 Malus domestica HOM05D000260 ORTHO05D000318 5.3e-09 65.1 187 25.7
Prupe.3G146600 Prunus persica HOM05D000260 ORTHO05D000318 5.3e-09 65.1 182 25.3
Solyc02g086270.4 Solanum lycopersicum HOM05D000260 ORTHO05D000318 5.3e-09 65.1 182 28.6
PGSC0003DMG400026384 Solanum tuberosum HOM05D000260 ORTHO05D000318 7.0e-09 64.7 182 29.1
COL.COLO4_09356 Corchorus olitorius HOM05D000072 ORTHO05D000318 9.1e-09 64.3 193 26.4
Sopen02g030950 Solanum pennellii HOM05D000260 ORTHO05D000318 9.1e-09 64.3 182 28.0
Migut.H00235 Erythranthe guttata HOM05D000260 ORTHO05D000318 1.2e-08 63.9 190 28.4
FAN15G3700 Fragaria x ananassa HOM05D000260 ORTHO05D000318 1.2e-08 63.9 182 29.1
Lj9C528T6 Lonicera japonica HOM05D000072 ORTHO05D000026 1.2e-08 63.9 189 29.1
Prupe.3G145700 Prunus persica HOM05D000072 ORTHO05D000026 1.2e-08 63.9 186 29.6
vmacro16437 Vaccinium macrocarpon HOM05D000072 ORTHO05D000026 1.2e-08 63.9 185 28.1
vmacro16438 Vaccinium macrocarpon HOM05D000260 ORTHO05D000318 1.2e-08 63.9 185 28.1
vmacro18067 Vaccinium macrocarpon HOM05D000260 ORTHO05D000318 1.2e-08 63.9 180 30.6
VMungo1383G2565 Vigna mungo HOM05D000260 ORTHO05D013008 1.2e-08 63.9 180 26.7
Dinv34805 Davidia involucrata HOM05D000260 ORTHO05D000318 1.6e-08 63.5 98 38.8
Potri.017G117175 Populus trichocarpa HOM05D000260 ORTHO05D000318 1.6e-08 63.5 192 27.1
QL10p047709 Quercus lobata HOM05D000260 ORTHO05D000318 1.6e-08 63.5 150 26.7
Sabra17G0097900 Salix brachista HOM05D000260 ORTHO05D000318 1.6e-08 63.5 187 27.3
AUR62009021 Chenopodium quinoa HOM05D000260 ORTHO05D000318 2.0e-08 63.2 182 27.5
AUR62009028 Chenopodium quinoa HOM05D000260 ORTHO05D000318 2.0e-08 63.2 182 27.5
AUR62023282 Chenopodium quinoa HOM05D000260 ORTHO05D000318 2.0e-08 63.2 168 28.0
Dinv15701 Davidia involucrata HOM05D000260 ORTHO05D000318 2.0e-08 63.2 180 31.1
FvH4_6g47250 Fragaria vesca HOM05D000072 ORTHO05D000026 2.0e-08 63.2 182 24.7
FAN14G5927 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.0e-08 63.2 182 24.7
Thecc.07G123600 Theobroma cacao HOM05D000072 ORTHO05D000026 2.0e-08 63.2 196 26.0
Thhalv10018045m.g Eutrema salsugineum HOM05D000260 ORTHO05D000318 2.7e-08 62.8 194 27.3
TPR.G33062 Trifolium pratense HOM05D000260 ORTHO05D000318 2.7e-08 62.8 187 28.9
Migut.L00345 Erythranthe guttata HOM05D000072 ORTHO05D000026 3.5e-08 62.4 189 32.8
Lsat_1_v5_gn_4_154280 Lactuca sativa HOM05D000260 ORTHO05D000318 3.5e-08 62.4 186 27.4
TAR627G0775 Trochodendron aralioides HOM05D000260 ORTHO05D000318 3.5e-08 62.4 89 40.4
Cpa.g.sc3.473 Carica papaya HOM05D000260 ORTHO05D000318 4.5e-08 62.0 187 28.3
AUR62000591 Chenopodium quinoa HOM05D000072 ORTHO05D000026 4.5e-08 62.0 186 27.4
Duzib205G0612 Durio zibethinus HOM05D000260 ORTHO05D000318 4.5e-08 62.0 178 25.8
Lj5C154G20 Lonicera japonica HOM05D000072 ORTHO05D000026 4.5e-08 62.0 178 28.7
MSTRG.3551 Avicennia marina HOM05D000072 ORTHO05D000026 5.9e-08 61.6 192 27.6
Duzib138G0276 Durio zibethinus HOM05D000260 ORTHO05D000318 5.9e-08 61.6 163 28.8
Duzib213G0625 Durio zibethinus HOM05D000072 ORTHO05D000026 5.9e-08 61.6 186 24.7
FAN24G2351 Fragaria x ananassa HOM05D000260 ORTHO05D000318 5.9e-08 61.6 182 27.5
SHI22387 Sapria himalayana HOM05D000260 ORTHO05D000318 7.7e-08 61.2 185 25.9
CSS0019807 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 1.0e-07 60.8 178 27.5
CAN.G625.38 Capsicum annuum HOM05D000072 ORTHO05D000026 1.0e-07 60.8 189 25.4
Eucgr.F02100 Eucalyptus grandis HOM05D000260 ORTHO05D000318 1.0e-07 60.8 184 27.2
QL12p016308 Quercus lobata HOM05D000072 ORTHO05D000026 1.0e-07 60.8 184 23.9
FAN15G2298 Fragaria x ananassa HOM05D000260 ORTHO05D000318 1.3e-07 60.5 147 27.9
Sabra17G0097500 Salix brachista HOM05D000260 ORTHO05D000318 1.3e-07 60.5 186 25.8
vmacro05530 Vaccinium macrocarpon HOM05D000260 ORTHO05D000318 1.3e-07 60.5 186 24.7
GSVIVG01030995001 Vitis vinifera HOM05D000072 ORTHO05D000026 1.3e-07 60.5 183 26.8
QL02p050590 Quercus lobata HOM05D000260 ORTHO05D000318 1.7e-07 60.1 185 24.9
MSTRG.23587 Avicennia marina HOM05D000072 ORTHO05D000026 2.2e-07 59.7 184 29.3
CiPaw.04G043800 Carya illinoinensis HOM05D000260 ORTHO05D000318 2.2e-07 59.7 182 24.2
AUR62006945 Chenopodium quinoa HOM05D000072 ORTHO05D000026 2.2e-07 59.7 176 27.3
Eucgr.B00812 Eucalyptus grandis HOM05D000072 ORTHO05D000026 2.2e-07 59.7 192 26.6
Eucgr.B00820 Eucalyptus grandis HOM05D000072 ORTHO05D000026 2.2e-07 59.7 192 26.6
FAN27G2036 Fragaria x ananassa HOM05D000260 ORTHO05D000318 2.2e-07 59.7 182 26.9
Prupe.1G497000 Prunus persica HOM05D000260 ORTHO05D000318 2.2e-07 59.7 219 23.3
FAN20G1929 Fragaria x ananassa HOM05D000260 ORTHO05D000318 2.9e-07 59.3 182 26.9
TPR.G36594 Trifolium pratense HOM05D000072 ORTHO05D000026 2.9e-07 59.3 186 29.0
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 3.8e-07 58.9 185 23.2
Eucgr.B00756 Eucalyptus grandis HOM05D000260 ORTHO05D000318 3.8e-07 58.9 184 28.3
Lj5A152G71 Lonicera japonica HOM05D000260 ORTHO05D000318 3.8e-07 58.9 196 25.0
Dinv28134 Davidia involucrata HOM05D000260 ORTHO05D004405 5.0e-07 58.5 194 25.8
Gohir.D01G041700 Gossypium hirsutum HOM05D000072 ORTHO05D000026 5.0e-07 58.5 188 22.9
PGSC0003DMG400015834 Solanum tuberosum HOM05D000072 ORTHO05D000026 5.0e-07 58.5 149 32.2
TPR.G24821 Trifolium pratense HOM05D000072 ORTHO05D000026 5.0e-07 58.5 195 28.7
Eucgr.B00766 Eucalyptus grandis HOM05D000072 ORTHO05D000026 6.5e-07 58.2 183 27.3
Gohir.A11G165350 Gossypium hirsutum HOM05D000260 ORTHO05D000318 6.5e-07 58.2 94 35.1
Lj4C190G2 Lonicera japonica HOM05D000260 ORTHO05D000318 6.5e-07 58.2 191 29.3
Lj2g0017271 Lotus japonicus HOM05D000072 ORTHO05D000026 6.5e-07 58.2 190 27.4
Solyc03g119240.3 Solanum lycopersicum HOM05D000260 ORTHO05D000318 6.5e-07 58.2 181 27.6
Migut.H00234 Erythranthe guttata HOM05D000260 ORTHO05D000318 8.5e-07 57.8 182 27.5
Medtr7g082530 Medicago truncatula HOM05D000260 ORTHO05D000318 8.5e-07 57.8 189 27.0
Potri.017G117400 Populus trichocarpa HOM05D000260 ORTHO05D000318 8.5e-07 57.8 187 24.1
QL10p026055 Quercus lobata HOM05D000260 ORTHO05D000318 8.5e-07 57.8 189 28.6
Migut.L00346 Erythranthe guttata HOM05D000072 ORTHO05D000026 1.1e-06 57.4 188 26.1
Lj4C188T2 Lonicera japonica HOM05D000260 ORTHO05D000318 1.1e-06 57.4 191 29.3
Lj5P151T44 Lonicera japonica HOM05D000260 ORTHO05D000318 1.1e-06 57.4 170 28.2
Ah.01g022310 Amaranthus hybridus HOM05D000260 ORTHO05D000318 1.5e-06 57.0 159 27.0
CiPaw.03G063700 Carya illinoinensis HOM05D000260 ORTHO05D000318 1.5e-06 57.0 189 25.4
FvH4_5g11780 Fragaria vesca HOM05D000072 ORTHO05D000026 1.5e-06 57.0 187 24.6
FAN08G3525 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.5e-06 57.0 184 25.0
Carub.0002s1316 Capsella rubella HOM05D000072 ORTHO05D000026 1.9e-06 56.6 189 23.8
FAN18G1212 Fragaria x ananassa HOM05D000260 ORTHO05D000318 1.9e-06 56.6 188 25.0
FAN18G3675 Fragaria x ananassa HOM05D000260 ORTHO05D000318 1.9e-06 56.6 188 25.0
Aqoxy3G00223 Aquilegia oxysepala HOM05D000072 ORTHO05D000026 2.5e-06 56.2 178 27.5
Ciclev10024376m.g Citrus clementina HOM05D000072 ORTHO05D000026 2.5e-06 56.2 193 28.5
Glyma.02G088700 Glycine max HOM05D000260 ORTHO05D000318 2.5e-06 56.2 178 29.8
Gohir.A01G052300 Gossypium hirsutum HOM05D000072 ORTHO05D000026 2.5e-06 56.2 188 22.3
Gorai.002G052300 Gossypium raimondii HOM05D000072 ORTHO05D000026 2.5e-06 56.2 188 22.3
Phvul.008G007900 Phaseolus vulgaris HOM05D000260 ORTHO05D000318 2.5e-06 56.2 179 25.7
Migut.L00334 Erythranthe guttata HOM05D000072 ORTHO05D000026 3.2e-06 55.8 97 37.1
Potri.017G117120 Populus trichocarpa HOM05D000072 ORTHO05D000026 3.2e-06 55.8 182 26.4
TWI60G0982 Tripterygium wilfordii HOM05D000260 ORTHO05D000318 3.2e-06 55.8 179 26.3
RcHm_v2.0_Chr2g0166321 Rosa chinensis HOM05D000260 ORTHO05D000318 4.2e-06 55.5 44 47.7
Haze_18717 Corylus avellana HOM05D000072 ORTHO05D000026 5.5e-06 55.1 192 22.4
HanXRQChr11g0325081 Helianthus annuus HOM05D000260 ORTHO05D000318 5.5e-06 55.1 95 36.8
Lj5C152G14 Lonicera japonica HOM05D000260 ORTHO05D000318 5.5e-06 55.1 181 26.5
SHI22383 Sapria himalayana HOM05D000260 ORTHO05D000318 5.5e-06 55.1 186 24.2
AUR62023280 Chenopodium quinoa HOM05D000260 ORTHO05D000318 9.4e-06 54.3 181 25.4
TWI60G0340 Tripterygium wilfordii HOM05D000260 ORTHO05D000318 9.4e-06 54.3 182 29.7


User provided reference genes

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