Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007893 Carpinus fangiana HOM05D003588 ORTHO05D004252 2.0e-74 282.3 145 100.0
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 2.0e-66 255.8 170 81.2
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 3.3e-64 248.4 143 87.4
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 1.6e-63 246.1 144 86.1
QL02p050347 Quercus lobata HOM05D003588 ORTHO05D004252 4.9e-60 234.6 137 86.1
GSVIVG01030980001 Vitis vinifera HOM05D003588 ORTHO05D004252 4.6e-58 228.0 139 81.3
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 2.3e-57 225.7 144 79.2
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 2.3e-57 225.7 144 79.2
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 5.1e-57 224.6 144 77.1
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 5.1e-57 224.6 144 79.9
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 6.6e-57 224.2 143 76.9
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 8.6e-57 223.8 144 77.1
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 3.3e-56 221.9 143 78.3
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 4.3e-56 221.5 144 80.6
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 4.3e-56 221.5 144 77.8
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 7.3e-56 220.7 144 79.2
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.6e-55 219.5 144 77.1
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 1.6e-55 219.5 148 77.0
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 3.6e-55 218.4 142 76.1
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 4.7e-55 218.0 143 76.2
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 6.2e-55 217.6 143 77.6
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 1.1e-54 216.9 144 75.0
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 3.1e-54 215.3 140 78.6
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 4.0e-54 214.9 148 75.7
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 5.2e-54 214.5 140 77.9
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 5.2e-54 214.5 144 74.3
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 5.2e-54 214.5 149 74.5
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 6.8e-54 214.2 143 74.8
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 1.5e-53 213.0 144 74.3
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 2.0e-53 212.6 145 74.5
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 4.4e-53 211.5 145 74.5
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 4.4e-53 211.5 140 77.1
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 4.4e-53 211.5 143 74.1
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 9.9e-53 210.3 140 77.1
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 9.9e-53 210.3 145 75.9
MSTRG.2778 Avicennia marina HOM05D003588 ORTHO05D004252 1.3e-52 209.9 139 77.0
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 1.3e-52 209.9 145 74.5
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.7e-52 209.5 144 74.3
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.7e-52 209.5 140 77.1
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 2.2e-52 209.1 140 77.1
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.2e-52 209.1 140 77.1
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.2e-52 209.1 140 77.1
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 2.2e-52 209.1 148 75.7
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 2.9e-52 208.8 145 73.8
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 2.9e-52 208.8 140 77.9
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 3.8e-52 208.4 145 74.5
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 4.9e-52 208.0 142 75.4
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 1.1e-51 206.8 146 71.9
Aqoxy3G00200 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.9e-51 206.1 138 76.1
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 2.4e-51 205.7 145 71.7
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 3.2e-51 205.3 152 73.0
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 3.2e-51 205.3 142 73.9
RcHm_v2.0_Chr3g0494131 Rosa chinensis HOM05D003588 ORTHO05D004252 3.2e-51 205.3 137 77.4
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 3.2e-51 205.3 143 74.8
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 4.1e-51 204.9 146 72.6
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 4.1e-51 204.9 146 72.6
MBI16_g38075_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 4.1e-51 204.9 144 70.8
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 4.1e-51 204.9 149 71.1
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 5.4e-51 204.5 139 73.4
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 5.4e-51 204.5 148 73.0
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 7.1e-51 204.1 145 71.7
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 9.2e-51 203.8 145 72.4
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 9.2e-51 203.8 144 72.2
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 1.2e-50 203.4 151 69.5
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 1.2e-50 203.4 151 69.5
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 1.2e-50 203.4 151 69.5
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 1.2e-50 203.4 151 69.5
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 1.2e-50 203.4 151 69.5
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 2.1e-50 202.6 144 72.2
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 2.1e-50 202.6 150 70.0
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 3.5e-50 201.8 143 71.3
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 3.5e-50 201.8 151 70.9
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 6.0e-50 201.1 149 71.1
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 6.0e-50 201.1 151 70.2
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 1.0e-49 200.3 151 71.5
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 1.0e-49 200.3 151 68.9
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 1.3e-49 199.9 149 72.5
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 1.7e-49 199.5 151 69.5
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 1.7e-49 199.5 137 73.0
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 3.0e-49 198.7 151 70.2
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 5.1e-49 198.0 146 69.9
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.5e-48 196.4 145 73.1
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 1.9e-48 196.1 143 72.0
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 7.3e-48 194.1 139 73.4
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 2.8e-47 192.2 151 67.5
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 2.8e-47 192.2 151 67.5
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 2.8e-47 192.2 151 67.5
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 3.6e-47 191.8 145 71.7
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 3.6e-47 191.8 145 71.7
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 1.8e-46 189.5 139 71.2
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 5.2e-46 188.0 139 68.3
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 1.2e-45 186.8 151 65.6
ATR0681G242 Amborella trichopoda HOM05D003588 ORTHO05D004252 2.0e-45 186.0 161 62.1
Lsat_1_v5_gn_4_155620 Lactuca sativa HOM05D003588 ORTHO05D004252 1.9e-43 179.5 139 65.5
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 4.2e-43 178.3 145 62.8
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 9.3e-43 177.2 143 65.0
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 4.6e-42 174.9 121 73.6
HanXRQChr09g0262701 Helianthus annuus HOM05D003588 ORTHO05D004252 4.6e-42 174.9 144 63.9
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 7.8e-42 174.1 144 62.5
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 1.0e-41 173.7 139 66.9
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 3.9e-41 171.8 148 62.8
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 3.9e-41 171.8 148 62.8
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 3.9e-41 171.8 148 62.8
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 3.9e-41 171.8 143 64.3
AUR62009038 Chenopodium quinoa HOM05D003588 ORTHO05D004252 5.1e-41 171.4 117 72.6
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 5.1e-41 171.4 147 61.9
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 2.5e-40 169.1 139 66.2
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 7.3e-40 167.5 120 75.8
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 4.8e-39 164.9 144 62.5
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 6.9e-38 161.0 144 62.5
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 1.5e-37 159.8 144 61.1
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 4.5e-37 158.3 151 58.3
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 5.8e-37 157.9 162 56.2
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 1.1e-32 143.7 146 56.2
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 4.3e-32 141.7 146 55.5
CDE02G3249 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 5.6e-32 141.4 116 58.6
Dinv34795 Davidia involucrata HOM05D003588 ORTHO05D004252 1.4e-30 136.7 80 82.5
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 2.2e-28 129.4 146 51.4
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 2.2e-28 129.4 146 51.4
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 2.9e-28 129.0 79 75.9
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 1.4e-27 126.7 141 56.7
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 1.0e-25 120.6 138 48.6
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 1.0e-25 120.6 140 47.9
SEGI_01406 Sequoiadendron giganteum HOM05D003588 ORTHO05D004252 3.9e-25 118.6 122 52.5
CDE02G1293 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 1.9e-24 116.3 100 60.0
Solyc02g086320.1 Solanum lycopersicum HOM05D003588 ORTHO05D004252 3.1e-22 109.0 86 68.6
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.7e-20 103.2 138 44.2
BcaC03g18478 Brassica carinata HOM05D003588 ORTHO05D004252 6.5e-20 101.3 88 62.5
Glyma.19G002000 Glycine max HOM05D003588 ORTHO05D004252 9.7e-16 87.4 90 55.6
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.9e-11 73.2 124 37.9
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 4.2e-11 72.0 94 38.3
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 7.2e-11 71.2 45 73.3


User provided reference genes

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