Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 3.0e-224 781.6 409 100.0
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 3.1e-213 745.0 409 94.9
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 2.8e-177 625.5 409 82.9
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 5.1e-171 604.7 407 81.6
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 4.3e-170 601.7 410 79.8
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 9.9e-159 563.9 354 86.7
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 3.0e-155 552.4 408 73.8
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 2.9e-150 535.8 409 70.2
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 4.2e-149 531.9 409 70.9
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 2.1e-148 529.6 412 69.9
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 3.5e-148 528.9 410 71.5
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 4.6e-148 528.5 409 70.2
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 4.6e-148 528.5 409 70.2
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 1.1e-146 523.9 408 69.6
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.8e-145 519.2 421 67.9
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 4.8e-145 518.5 411 69.3
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 8.2e-145 517.7 408 69.6
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 2.0e-143 513.1 409 68.2
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 2.0e-143 513.1 412 68.7
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 7.6e-143 511.1 409 68.0
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 1.0e-142 510.8 410 67.1
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 5.5e-141 505.0 410 68.0
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.3e-139 499.6 406 68.5
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 8.7e-139 497.7 409 65.8
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 1.3e-137 493.8 409 64.5
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 4.8e-137 491.9 418 64.8
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 4.1e-136 488.8 407 64.9
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 5.3e-136 488.4 405 66.4
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 6.9e-136 488.0 417 64.7
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 9.0e-136 487.6 412 64.8
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 2.0e-135 486.5 417 64.7
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 4.5e-135 485.3 412 64.8
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 5.9e-135 485.0 411 66.2
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 1.3e-134 483.8 456 62.1
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 2.2e-134 483.0 416 65.6
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 8.5e-134 481.1 417 64.0
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 8.5e-134 481.1 420 63.1
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 1.4e-133 480.3 412 65.5
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 2.5e-133 479.6 410 65.1
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 4.2e-133 478.8 424 63.9
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 1.8e-131 473.4 409 62.6
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 3.9e-131 472.2 415 63.4
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 8.8e-131 471.1 414 65.2
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.1e-130 470.7 438 60.0
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 4.3e-130 468.8 410 64.1
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 2.2e-129 466.5 402 64.2
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 4.8e-129 465.3 419 62.1
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 2.4e-128 463.0 412 62.9
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 6.9e-128 461.5 416 61.3
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.5e-127 460.3 409 63.1
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 4.5e-127 458.8 428 62.1
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 5.9e-127 458.4 415 64.1
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 7.7e-127 458.0 420 61.0
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 6.5e-126 454.9 387 64.6
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 8.5e-126 454.5 409 62.3
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 8.5e-126 454.5 437 59.0
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 1.4e-125 453.8 400 63.0
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 1.9e-125 453.4 411 63.3
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 2.5e-125 453.0 403 63.8
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.5e-125 453.0 387 64.3
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.1e-124 449.9 409 61.4
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 2.1e-124 449.9 444 57.9
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 2.1e-124 449.9 414 62.8
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 1.0e-123 447.6 409 60.4
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 1.0e-123 447.6 411 59.4
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 6.7e-123 444.9 414 62.1
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 5.7e-122 441.8 328 72.0
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.2e-121 439.9 374 67.1
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 4.8e-121 438.7 382 66.8
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.1e-120 437.6 454 56.2
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 3.1e-120 436.0 358 64.2
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 2.6e-119 433.0 416 57.7
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.3e-118 430.6 358 66.5
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 1.1e-117 427.6 507 50.5
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 4.2e-117 425.6 380 60.5
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 2.6e-114 416.4 406 58.4
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 4.8e-113 412.1 500 51.0
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.4e-112 409.8 385 62.6
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 4.5e-111 405.6 412 58.3
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 1.0e-110 404.4 422 58.5
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 1.1e-109 401.0 409 55.7
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 9.4e-109 397.9 423 55.8
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 1.0e-107 394.4 408 56.9
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 4.0e-107 392.5 401 55.1
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 5.2e-107 392.1 402 57.2
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 1.7e-105 387.1 407 56.3
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 1.8e-104 383.6 406 54.2
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 2.4e-104 383.3 406 55.4
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 7.0e-104 381.7 399 56.1
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 4.5e-103 379.0 409 55.3
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 4.5e-103 379.0 407 53.6
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 4.5e-103 379.0 394 56.9
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 5.9e-103 378.6 406 53.4
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 5.0e-102 375.6 394 54.1
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 8.5e-102 374.8 407 53.3
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 1.5e-101 374.0 408 52.9
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 2.7e-100 369.8 409 53.3
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 4.0e-99 365.9 407 54.1
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 3.7e-97 359.4 377 58.9
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 1.4e-96 357.5 431 51.0
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 9.1e-96 354.8 333 62.8
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 2.0e-95 353.6 412 50.5
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 2.7e-95 353.2 411 52.3
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 1.0e-94 351.3 408 50.0
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.1e-93 347.8 406 49.8
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 2.4e-88 330.1 424 47.6
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 7.0e-88 328.6 292 64.7
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 3.6e-84 316.2 371 52.3
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.1e-76 290.4 349 51.6
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 6.8e-75 285.4 409 47.9
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 7.6e-66 255.4 321 48.9
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 1.3e-65 254.6 350 47.7
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 6.4e-65 252.3 360 47.5
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 5.1e-62 242.7 226 60.6
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 5.6e-61 239.2 235 55.7
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 4.7e-60 236.1 265 55.5
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 3.1e-59 233.4 322 48.1
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 7.1e-56 222.2 440 38.0
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 1.6e-44 184.5 427 35.4
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 3.3e-37 160.2 129 65.1
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 4.9e-33 146.4 166 53.0
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 5.5e-32 142.9 153 54.2
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 5.5e-32 142.9 153 54.2
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 9.3e-32 142.1 126 57.1
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.6e-31 141.4 359 32.3
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 5.3e-27 126.3 143 52.4
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 3.8e-25 120.2 290 34.1
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.1e-21 108.6 71 87.3
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 1.5e-21 108.2 98 70.4
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 4.1e-19 100.1 160 45.6
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.4e-14 85.1 179 40.8
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 3.0e-14 84.0 122 44.3
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 5.1e-14 83.2 65 67.7
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 2.0e-13 81.3 88 55.7
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.4e-11 75.1 105 44.8
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 1.8e-11 74.7 39 71.8
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.8e-09 67.0 51 76.5
MELO3C033909.2 Cucumis melo HOM05D005133 ORTHO05D020525 3.0e-06 57.4 103 45.6
MELO3C030134.2 Cucumis melo HOM05D005133 ORTHO05D006685 5.1e-06 56.6 81 50.6
Sp4g28240 Schrenkiella parvula HOM05D005133 ORTHO05D006685 6.7e-06 56.2 52 51.9


User provided reference genes

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