Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 5.9e-91 337.4 160 100.0
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 9.2e-68 260.4 160 81.9
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 2.1e-51 206.1 163 64.4
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 7.3e-41 171.0 164 56.1
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 2.8e-40 169.1 132 62.9
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 6.2e-40 167.9 155 55.5
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 8.1e-40 167.5 137 61.3
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.1e-39 167.2 161 54.7
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 1.8e-39 166.4 160 53.1
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 3.1e-39 165.6 159 56.0
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 5.3e-39 164.9 153 56.9
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 5.3e-39 164.9 114 68.4
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 5.3e-39 164.9 162 56.8
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 9.0e-39 164.1 116 64.7
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 9.0e-39 164.1 159 55.3
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 1.5e-38 163.3 133 59.4
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 1.5e-38 163.3 149 56.4
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 2.0e-38 162.9 116 66.4
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 2.0e-38 162.9 120 65.0
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 2.6e-38 162.5 162 53.7
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 3.4e-38 162.2 116 67.2
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 4.4e-38 161.8 113 66.4
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 7.6e-38 161.0 134 59.7
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 9.9e-38 160.6 142 59.2
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 9.9e-38 160.6 121 65.3
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.3e-37 160.2 160 53.8
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.7e-37 159.8 129 59.7
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.7e-37 159.8 150 55.3
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 1.7e-37 159.8 116 64.7
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 1.7e-37 159.8 116 64.7
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.7e-37 159.8 120 64.2
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 2.9e-37 159.1 155 52.3
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 2.9e-37 159.1 131 61.1
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 2.9e-37 159.1 132 61.4
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 3.8e-37 158.7 154 53.2
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 3.8e-37 158.7 216 43.5
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 4.9e-37 158.3 119 63.9
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 4.9e-37 158.3 119 63.9
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 4.9e-37 158.3 119 63.9
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 4.9e-37 158.3 115 65.2
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 4.9e-37 158.3 115 65.2
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 4.9e-37 158.3 151 55.6
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 6.4e-37 157.9 123 62.6
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 6.4e-37 157.9 123 62.6
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 8.4e-37 157.5 144 58.3
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.1e-36 157.1 119 63.0
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 1.1e-36 157.1 155 55.5
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 1.1e-36 157.1 144 56.9
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 1.1e-36 157.1 115 64.3
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 1.4e-36 156.8 148 54.7
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 1.4e-36 156.8 132 61.4
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.4e-36 156.8 115 64.3
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 1.9e-36 156.4 152 54.6
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 4.2e-36 155.2 130 59.2
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 5.4e-36 154.8 140 58.6
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 5.4e-36 154.8 128 59.4
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 5.4e-36 154.8 116 63.8
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 7.1e-36 154.5 162 52.5
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 9.3e-36 154.1 165 52.1
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 1.2e-35 153.7 115 62.6
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 1.2e-35 153.7 129 60.5
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 1.2e-35 153.7 118 64.4
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 1.6e-35 153.3 120 62.5
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 2.1e-35 152.9 120 62.5
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 2.1e-35 152.9 170 49.4
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 2.7e-35 152.5 120 61.7
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 2.7e-35 152.5 171 49.1
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 3.5e-35 152.1 159 50.3
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 3.5e-35 152.1 143 55.2
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 6.0e-35 151.4 149 54.4
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 7.8e-35 151.0 119 60.5
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 1.0e-34 150.6 103 67.0
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 1.7e-34 149.8 120 61.7
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 2.3e-34 149.4 144 54.9
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 2.3e-34 149.4 116 63.8
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 3.0e-34 149.1 158 51.3
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 8.7e-34 147.5 152 50.7
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 8.7e-34 147.5 132 54.5
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 2.5e-33 146.0 130 56.2
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 9.6e-33 144.1 113 58.4
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 2.6e-30 136.0 94 67.0
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 2.6e-30 136.0 120 56.7
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 1.3e-29 133.7 146 47.9
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 4.9e-29 131.7 103 58.3
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 6.0e-27 124.8 103 54.4
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 5.1e-26 121.7 112 50.9
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 5.8e-22 108.2 51 90.2
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 9.9e-22 107.5 51 92.2
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 1.3e-21 107.1 52 86.5
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 1.3e-21 107.1 52 88.5
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 4.9e-21 105.1 51 88.2
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 6.7e-18 94.7 115 46.1
MELO3C020311.2 Cucumis melo HOM05D007646 ORTHO05D004022 2.6e-14 82.8 45 75.6
Nn3g18065 Nelumbo nucifera HOM05D007646 ORTHO05D004022 2.2e-13 79.7 95 48.4
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 3.0e-10 69.3 111 34.2
unitig_748.g8495 Utricularia gibba HOM05D007646 ORTHO05D004022 3.0e-10 69.3 73 47.9
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 3.9e-10 68.9 34 79.4
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 1.9e-09 66.6 101 34.7
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.2e-08 63.2 120 32.5
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 3.7e-08 62.4 102 33.3
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 4.8e-08 62.0 103 34.0
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 6.3e-08 61.6 101 33.7
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 6.3e-08 61.6 101 33.7
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 6.3e-08 61.6 101 33.7
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 8.2e-08 61.2 147 28.6
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 8.2e-08 61.2 102 32.4
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 2.4e-07 59.7 99 33.3
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 2.4e-07 59.7 101 32.7
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 3.1e-07 59.3 104 29.8
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 3.1e-07 59.3 109 31.2
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 3.1e-07 59.3 101 32.7
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 4.1e-07 58.9 101 33.7
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 4.1e-07 58.9 101 33.7
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 5.3e-07 58.5 101 31.7
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 5.3e-07 58.5 101 31.7
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 6.9e-07 58.2 99 33.3
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 9.0e-07 57.8 110 31.8
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 9.0e-07 57.8 103 32.0
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 9.0e-07 57.8 106 31.1
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 1.2e-06 57.4 101 32.7
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.2e-06 57.4 101 32.7
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 1.5e-06 57.0 101 31.7
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 1.5e-06 57.0 99 33.3
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 2.0e-06 56.6 111 31.5
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 2.0e-06 56.6 102 31.4
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 2.6e-06 56.2 102 31.4
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 2.6e-06 56.2 102 30.4
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 2.6e-06 56.2 101 31.7
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 2.6e-06 56.2 107 28.0
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 2.6e-06 56.2 102 30.4
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 2.6e-06 56.2 101 31.7
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 3.4e-06 55.8 101 30.7
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 4.5e-06 55.5 102 31.4
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 4.5e-06 55.5 101 31.7
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 4.5e-06 55.5 101 31.7
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 4.5e-06 55.5 102 30.4
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 5.9e-06 55.1 102 30.4
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 5.9e-06 55.1 104 31.7
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 7.7e-06 54.7 101 29.7
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 7.7e-06 54.7 120 27.5
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 1.0e-05 54.3 101 29.7
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.0e-05 54.3 146 24.7
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 1.0e-05 54.3 102 30.4


User provided reference genes

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