Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 2.0e-203 712.2 361 100.0
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 2.3e-167 592.4 360 82.5
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 7.7e-163 577.4 363 81.0
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 1.1e-161 573.5 363 80.7
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.2e-160 570.1 361 80.3
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 6.1e-160 567.8 361 79.5
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 6.1e-160 567.8 361 79.5
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 2.3e-159 565.8 364 79.7
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 3.0e-159 565.5 362 77.9
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 1.1e-158 563.5 360 80.0
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 1.7e-157 559.7 362 79.0
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 8.2e-157 557.4 361 78.4
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 5.3e-156 554.7 360 77.8
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 5.9e-155 551.2 362 78.2
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 1.0e-154 550.4 361 78.4
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 1.4e-153 546.6 376 74.2
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 5.1e-151 538.1 359 76.9
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 6.7e-151 537.7 358 77.7
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.1e-150 537.0 382 74.6
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 1.5e-150 536.6 361 74.8
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.5e-150 536.6 333 82.6
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 2.6e-150 535.8 331 82.8
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 7.4e-150 534.3 364 72.0
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 1.3e-149 533.5 362 74.0
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.2e-149 532.7 357 75.6
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 2.8e-149 532.3 361 74.2
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 2.8e-149 532.3 361 74.2
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 2.8e-149 532.3 361 74.2
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 2.8e-149 532.3 362 74.0
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 6.3e-149 531.2 361 74.0
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 1.1e-148 530.4 360 75.3
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.4e-148 530.0 361 74.8
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 3.1e-148 528.9 360 73.3
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 7.0e-148 527.7 357 74.5
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 7.0e-148 527.7 360 75.0
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 1.6e-147 526.6 356 75.3
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 1.6e-147 526.6 361 75.6
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 2.0e-147 526.2 361 73.7
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 3.5e-147 525.4 356 74.7
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 7.7e-147 524.2 361 73.4
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 2.2e-146 522.7 360 75.8
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 5.0e-146 521.5 361 73.4
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.1e-145 520.4 366 71.9
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 1.1e-145 520.4 362 74.0
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 1.9e-145 519.6 362 74.3
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 3.2e-145 518.8 363 74.4
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 7.2e-145 517.7 361 74.5
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 9.4e-145 517.3 384 70.6
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 1.6e-144 516.5 361 71.5
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 1.6e-144 516.5 330 77.6
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 6.1e-144 514.6 357 72.8
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.4e-143 513.5 362 73.5
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 3.0e-143 512.3 356 73.3
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 2.6e-142 509.2 361 73.7
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 2.6e-142 509.2 363 72.2
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 2.6e-142 509.2 361 71.2
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 7.5e-142 507.7 364 71.7
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 9.7e-142 507.3 369 70.7
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.3e-141 506.9 346 74.3
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 1.3e-141 506.9 360 73.3
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 1.3e-141 506.9 372 70.4
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 1.7e-141 506.5 333 76.0
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.2e-141 506.1 356 71.6
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 2.8e-141 505.8 360 75.6
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 6.3e-141 504.6 356 71.3
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 5.3e-140 501.5 412 64.8
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 2.7e-139 499.2 367 69.8
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 2.2e-138 496.1 368 70.4
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 4.2e-137 491.9 363 72.5
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 1.2e-136 490.3 437 63.8
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 1.0e-135 487.3 330 73.0
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 1.2e-134 483.8 364 67.6
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 2.8e-133 479.2 282 82.3
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 6.3e-133 478.0 364 69.8
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 1.2e-128 463.8 358 66.8
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 2.0e-126 456.4 341 71.3
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 9.8e-126 454.1 378 64.6
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 3.1e-124 449.1 363 67.8
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 3.1e-124 449.1 355 63.9
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 9.2e-124 447.6 354 68.1
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.5e-121 440.3 264 80.3
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 3.3e-121 439.1 360 65.0
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 3.6e-120 435.6 264 87.1
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 6.8e-119 431.4 303 69.6
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 7.0e-116 421.4 339 64.9
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.9e-113 413.3 356 61.2
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 4.7e-112 408.7 264 81.4
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.0e-111 407.5 387 59.2
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.2e-110 404.1 271 75.6
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 1.5e-110 403.7 263 80.2
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 2.4e-108 396.4 301 66.4
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 7.0e-108 394.8 270 78.5
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 1.7e-106 390.2 265 78.9
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 4.3e-105 385.6 337 60.8
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 2.8e-104 382.9 334 58.4
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 6.2e-104 381.7 263 74.5
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 1.1e-103 380.9 334 59.0
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 5.2e-103 378.6 259 76.1
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 1.7e-98 363.6 259 72.2
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 4.3e-97 359.0 255 72.5
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 5.6e-97 358.6 287 63.1
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 4.7e-96 355.5 192 95.3
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 4.4e-94 349.0 311 59.2
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 4.6e-91 339.0 355 50.1
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 2.5e-89 333.2 246 72.8
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 9.9e-78 294.7 340 47.4
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 4.0e-71 272.7 341 46.3
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.4e-63 246.9 214 62.1
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 3.0e-58 229.9 435 35.4
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.6e-56 224.2 219 55.3
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 5.1e-50 202.6 377 36.1
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 7.4e-49 198.7 217 50.7
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 4.8e-48 196.1 145 72.4
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.5e-46 191.0 148 69.6
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.7e-40 171.0 158 60.1
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 7.9e-35 152.1 300 33.0
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 3.3e-33 146.7 148 54.7
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 5.7e-33 146.0 138 58.7
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 9.7e-33 145.2 108 75.9
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.7e-29 134.4 118 55.9
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 6.5e-29 132.5 96 62.5
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 2.0e-25 120.9 75 76.0
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 3.3e-25 120.2 81 74.1
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 2.2e-24 117.5 73 75.3
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 4.5e-22 109.8 77 74.0
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 4.5e-22 109.8 310 30.0
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 1.0e-18 98.6 96 59.4
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 2.4e-07 60.8 96 36.5
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 1.6e-06 58.2 142 27.5
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 1.6e-06 58.2 125 28.0
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 3.5e-06 57.0 88 37.5
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 3.5e-06 57.0 88 37.5
Aa31sc265G50 Aethionema arabicum HOM05D003894 ORTHO05D004584 4.5e-06 56.6 88 36.4
BolC7t43649H Brassica oleracea HOM05D003894 ORTHO05D004584 4.5e-06 56.6 88 37.5
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 4.5e-06 56.6 88 37.5
TWI60G0612 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 4.5e-06 56.6 142 26.8
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 5.9e-06 56.2 88 37.5


User provided reference genes

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