Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 8.8e-171 603.6 320 100.0
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 4.1e-152 541.6 306 94.8
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 4.9e-145 518.1 320 88.1
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 8.4e-137 490.7 320 83.8
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 1.6e-132 476.5 322 82.0
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 6.2e-132 474.6 322 82.0
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 5.4e-128 461.5 320 79.7
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.3e-126 456.1 320 79.7
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 8.1e-124 447.6 326 72.7
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 1.1e-123 447.2 310 79.7
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 4.5e-122 441.8 322 76.4
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 9.9e-122 440.7 322 78.3
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 1.7e-121 439.9 320 77.5
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 1.9e-120 436.4 320 72.8
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 1.2e-119 433.7 320 72.5
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 1.6e-119 433.3 320 73.8
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 2.1e-119 433.0 279 82.4
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 7.9e-119 431.0 327 71.9
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 7.9e-119 431.0 321 73.5
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 1.3e-118 430.3 320 72.5
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 2.3e-118 429.5 324 75.3
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 2.3e-118 429.5 311 73.0
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.9e-118 428.7 320 75.9
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 3.9e-118 428.7 265 87.2
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 5.1e-118 428.3 320 73.1
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 8.7e-118 427.6 320 72.8
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 1.5e-117 426.8 318 71.4
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 1.5e-117 426.8 322 71.7
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 1.9e-117 426.4 321 71.7
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.5e-117 426.0 323 74.9
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 4.3e-117 425.2 269 85.1
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 5.6e-117 424.9 328 73.8
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 1.3e-116 423.7 311 72.3
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 3.6e-116 422.2 329 72.9
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 4.8e-116 421.8 322 73.6
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 8.1e-116 421.0 328 72.6
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 1.1e-115 420.6 329 72.6
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 1.8e-115 419.9 329 74.2
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 9.0e-115 417.5 330 73.0
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 9.0e-115 417.5 322 73.3
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 1.2e-114 417.2 321 73.2
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 3.4e-114 415.6 320 69.4
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 3.4e-114 415.6 323 73.1
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 9.9e-114 414.1 326 69.3
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 1.3e-113 413.7 320 72.5
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 1.7e-113 413.3 281 76.5
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 1.7e-113 413.3 320 71.9
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 3.8e-113 412.1 324 70.1
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 2.4e-112 409.5 318 70.4
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 7.1e-112 407.9 324 70.1
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 2.7e-111 406.0 292 73.6
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 4.6e-111 405.2 269 78.1
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 1.3e-110 403.7 268 78.4
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.3e-110 403.7 265 82.3
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 6.7e-110 401.4 266 80.5
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 1.1e-109 400.6 321 70.7
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 1.5e-109 400.2 269 78.8
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 1.5e-109 400.2 306 71.9
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 2.5e-109 399.4 308 71.1
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 3.3e-109 399.1 290 74.8
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 3.3e-109 399.1 321 70.4
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 7.4e-109 397.9 300 72.7
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 6.2e-108 394.8 326 66.6
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 1.8e-107 393.3 261 79.3
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 2.4e-107 392.9 305 68.2
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 9.0e-107 391.0 340 66.8
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 7.6e-106 387.9 277 71.5
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 1.3e-105 387.1 321 67.0
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 3.8e-105 385.6 241 79.7
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.9e-104 383.3 323 67.5
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 7.1e-104 381.3 268 78.4
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 7.1e-104 381.3 275 70.5
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.2e-103 380.6 267 74.9
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.2e-103 380.6 268 78.0
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 2.7e-103 379.4 266 75.6
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 1.0e-102 377.5 268 76.9
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 1.0e-102 377.5 321 64.5
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 1.0e-102 377.5 268 76.1
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 1.5e-101 373.6 269 76.2
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 1.9e-101 373.2 326 66.9
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 3.3e-101 372.5 325 68.3
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 4.3e-101 372.1 321 64.5
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 5.7e-101 371.7 275 68.4
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 8.2e-100 367.9 327 65.7
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 1.8e-99 366.7 235 83.0
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 1.2e-98 364.0 312 62.8
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 1.2e-98 364.0 312 62.8
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 2.5e-96 356.3 276 67.4
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 2.5e-96 356.3 327 62.4
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 4.2e-96 355.5 329 62.3
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 1.6e-95 353.6 283 66.1
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.5e-93 347.1 244 78.3
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 3.3e-93 345.9 275 66.5
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 7.4e-93 344.7 290 64.5
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 1.6e-92 343.6 278 65.1
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 2.0e-90 336.7 267 69.3
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 4.5e-90 335.5 257 70.8
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 2.9e-89 332.8 321 63.9
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 1.4e-86 323.9 330 58.2
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 2.6e-85 319.7 235 70.2
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.4e-83 313.9 257 69.3
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 9.1e-83 311.2 269 66.9
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 7.2e-80 301.6 243 64.6
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 6.1e-79 298.5 326 54.3
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 3.9e-78 295.8 328 51.5
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 1.1e-72 277.7 238 64.7
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 6.1e-71 271.9 183 78.1
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 6.7e-70 268.5 231 68.0
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 8.8e-70 268.1 180 75.6
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 6.1e-63 245.4 284 53.5
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 4.0e-62 242.7 270 52.6
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 1.7e-60 237.3 155 76.8
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 1.6e-58 230.7 236 55.5
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.8e-49 199.5 264 51.9
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 2.0e-45 187.2 179 62.0
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 7.0e-43 178.7 150 62.7
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 1.9e-24 117.5 81 70.4
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 5.2e-22 109.4 116 52.6
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 3.3e-16 90.1 122 48.4
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 3.6e-15 86.7 122 48.4
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 8.1e-15 85.5 99 52.5
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 1.1e-08 65.1 66 53.0
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 4.3e-08 63.2 66 53.0


User provided reference genes

Program Settings