Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 7.9e-244 846.7 424 100.0
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 2.8e-188 662.1 399 86.0
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 8.4e-185 650.6 425 76.7
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 6.0e-175 617.8 480 66.9
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 7.8e-175 617.5 419 74.0
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 5.1e-174 614.8 421 74.3
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 6.6e-174 614.4 423 72.8
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 5.6e-173 611.3 419 71.8
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 1.6e-172 609.8 421 72.0
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 1.8e-171 606.3 423 71.9
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 9.0e-171 604.0 426 71.1
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 1.3e-169 600.1 423 72.1
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 6.0e-167 591.3 419 71.6
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 1.8e-166 589.7 421 69.4
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 2.3e-166 589.3 423 69.7
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 8.7e-166 587.4 419 69.0
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 3.7e-164 582.0 419 69.7
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 4.8e-164 581.6 419 71.1
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 6.9e-163 577.8 382 72.8
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 2.0e-162 576.2 419 68.7
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 2.6e-162 575.9 431 68.2
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.8e-162 574.7 425 68.5
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.9e-162 573.9 425 68.5
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 1.3e-161 573.5 421 68.9
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-160 569.7 425 67.8
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 9.3e-160 567.4 421 67.5
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 2.7e-159 565.8 419 69.2
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 7.9e-159 564.3 410 69.8
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 1.3e-158 563.5 423 67.8
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.8e-158 563.1 424 66.3
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 3.0e-158 562.4 418 67.7
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 3.9e-158 562.0 412 69.7
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 3.9e-158 562.0 419 68.0
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 3.9e-158 562.0 420 66.2
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 3.9e-158 562.0 419 69.0
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 5.1e-158 561.6 420 67.1
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 8.7e-158 560.8 411 69.6
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 1.1e-157 560.5 419 67.3
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 3.3e-157 558.9 419 65.6
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 4.8e-156 555.1 419 66.8
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 8.2e-156 554.3 422 65.4
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 8.2e-156 554.3 381 71.4
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 2.4e-155 552.7 424 65.1
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 3.1e-155 552.4 419 66.1
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 9.0e-155 550.8 420 64.5
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.5e-154 550.1 383 69.2
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 2.0e-154 549.7 419 63.7
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.7e-153 546.6 424 65.3
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 4.9e-153 545.0 435 63.2
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.2e-152 542.3 456 62.1
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 1.6e-151 540.0 425 63.5
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 3.5e-151 538.9 420 63.6
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 4.6e-151 538.5 369 71.3
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 6.0e-151 538.1 419 63.2
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.0e-150 537.3 456 61.2
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 1.8e-150 536.6 422 64.0
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 1.8e-150 536.6 381 70.1
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 2.3e-150 536.2 420 63.6
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 3.0e-150 535.8 498 57.4
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 5.1e-150 535.0 422 63.3
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 5.1e-150 535.0 387 71.3
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 5.1e-150 535.0 420 64.8
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 1.5e-149 533.5 422 63.7
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 1.5e-149 533.5 384 68.0
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 1.5e-149 533.5 422 64.2
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 4.3e-149 531.9 381 68.0
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 1.6e-148 530.0 419 62.5
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 1.6e-148 530.0 381 69.3
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 2.8e-148 529.3 420 62.1
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 1.8e-147 526.6 420 63.1
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 2.4e-147 526.2 420 62.4
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 9.0e-147 524.2 422 63.3
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 1.5e-146 523.5 381 68.0
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 2.6e-146 522.7 419 61.8
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 1.0e-145 520.8 423 62.2
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 9.4e-144 514.2 413 61.5
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 1.6e-143 513.5 422 61.4
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 2.1e-143 513.1 423 61.9
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 2.3e-142 509.6 420 61.7
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 1.2e-138 497.3 330 72.7
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 3.4e-138 495.7 359 69.1
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 6.5e-137 491.5 442 59.0
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 1.2e-135 487.3 494 53.2
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 2.2e-132 476.5 432 59.5
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 2.2e-124 449.9 370 58.9
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 5.5e-120 435.3 418 55.0
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 2.1e-119 433.3 382 56.5
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 3.3e-117 426.0 283 73.1
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 8.2e-116 421.4 350 58.9
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.2e-114 417.5 324 67.6
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 1.7e-113 413.7 303 65.7
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 6.5e-113 411.8 272 73.9
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 7.5e-109 398.3 274 70.1
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 1.6e-103 380.6 426 50.0
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 9.8e-101 371.3 392 49.2
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 7.3e-96 355.1 282 65.2
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 3.6e-95 352.8 396 46.0
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 3.2e-91 339.7 263 67.3
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 9.2e-91 338.2 282 58.9
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 4.6e-90 335.9 391 45.8
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 3.3e-88 329.7 220 72.7
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 3.3e-88 329.7 193 85.5
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 3.3e-80 303.1 225 67.1
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 4.9e-76 289.3 472 37.1
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 4.1e-75 286.2 373 41.0
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 3.2e-67 260.0 308 44.5
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 4.5e-53 213.0 135 82.2
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 1.4e-51 208.0 174 59.8
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 8.2e-39 165.6 139 60.4
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 2.4e-38 164.1 531 24.7
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 6.1e-34 149.4 104 67.3
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 1.1e-32 145.2 171 50.3
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.3e-32 143.3 153 54.2
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.8e-31 139.8 151 52.3
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.8e-31 139.8 151 52.3
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.8e-31 139.8 151 52.3
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-30 138.3 151 51.7
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.4e-30 137.5 151 51.7
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.0e-30 135.6 134 54.5
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 2.6e-29 134.0 111 58.6
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.3e-28 131.7 120 58.3
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 6.5e-28 129.4 88 72.7
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.5e-27 127.5 134 51.5
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.2e-27 127.1 76 77.6
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 3.2e-27 127.1 80 76.2
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 3.0e-25 120.6 139 48.2
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 3.9e-25 120.2 79 72.2
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 4.8e-23 113.2 141 50.4
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 5.3e-22 109.8 126 50.0
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 6.5e-20 102.8 74 64.9
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.2e-19 99.4 94 56.4
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 7.2e-19 99.4 94 56.4
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.2e-18 98.6 94 56.4
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 3.6e-18 97.1 71 62.0
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.9e-17 93.6 60 68.3
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.6e-16 90.9 92 54.3
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.7e-16 89.0 94 52.1
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 1.3e-15 88.6 54 81.5
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 3.1e-14 84.0 65 69.2
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.5e-11 74.3 122 40.2
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 3.6e-10 70.5 80 43.8
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 1.8e-09 68.2 58 53.4
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 5.3e-06 56.6 34 70.6


User provided reference genes

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