Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007825 Carpinus fangiana HOM05D009020 ORTHO05D010722 1.0e-96 356.7 177 100.0
Haze_14243 Corylus avellana HOM05D009020 ORTHO05D010722 1.7e-62 243.0 146 80.8
Haze_14246 Corylus avellana HOM05D009020 ORTHO05D010722 1.7e-62 243.0 146 80.8
QL02p057804 Quercus lobata HOM05D009020 ORTHO05D010722 3.2e-45 185.7 170 54.1
Ciclev10033509m.g Citrus clementina HOM05D009020 ORTHO05D010722 6.9e-32 141.4 156 51.3
Potri.006G180700 Populus trichocarpa HOM05D009020 ORTHO05D010722 3.2e-29 132.5 152 48.0
Manes.14G113400 Manihot esculenta HOM05D009020 ORTHO05D010722 2.1e-28 129.8 151 44.4
Lalb_Chr07g0188631 Lupinus albus HOM05D009020 ORTHO05D010722 6.0e-28 128.3 134 49.3
Sabra06G0137800 Salix brachista HOM05D003560 ORTHO05D004500 1.0e-27 127.5 184 45.1
Lj1g0016360 Lotus japonicus HOM05D009020 ORTHO05D010722 3.0e-27 125.9 134 51.5
Lalb_Chr07g0188651 Lupinus albus HOM05D009020 ORTHO05D010722 5.1e-27 125.2 134 48.5
Prupe.2G246500 Prunus persica HOM05D009020 ORTHO05D010722 1.3e-25 120.6 141 49.6
Sabra18G0088500 Salix brachista HOM05D009020 ORTHO05D010722 2.1e-25 119.8 172 43.0
Dinv20958 Davidia involucrata HOM05D002301 ORTHO05D002316 3.7e-25 119.0 150 44.0
Dinv20985 Davidia involucrata HOM05D002301 ORTHO05D002316 3.7e-25 119.0 150 44.0
Medtr3g070160 Medicago truncatula HOM05D009020 ORTHO05D010722 6.9e-24 114.8 137 45.3
Potri.018G102900 Populus trichocarpa HOM05D009020 ORTHO05D010722 1.5e-23 113.6 177 42.9
Cfa001364 Carpinus fangiana HOM05D009020 ORTHO05D010722 3.2e-21 105.9 136 42.6
Haze_17186 Corylus avellana HOM05D002301 ORTHO05D002316 4.2e-21 105.5 161 37.9
TPR.G16305 Trifolium pratense HOM05D009020 ORTHO05D010722 1.2e-20 104.0 140 41.4
Thecc.10G025900 Theobroma cacao HOM05D021924 ORTHO05D010722 1.6e-20 103.6 135 44.4
Lalb_Chr15g0084281 Lupinus albus HOM05D009020 ORTHO05D010722 2.3e-19 99.8 148 41.2
Atru.chr12.238 Acer truncatum HOM05D009020 ORTHO05D010722 9.6e-18 94.4 144 41.0
Manes.10G017300 Manihot esculenta HOM05D009020 ORTHO05D010722 1.6e-17 93.6 139 43.9
TAR299G0004 Trochodendron aralioides HOM05D009020 ORTHO05D010722 1.4e-16 90.5 144 39.6
COL.COLO4_25656 Corchorus olitorius HOM05D021924 ORTHO05D010722 2.4e-16 89.7 137 39.4
arahy.Tifrunner.gnm1.ann1.V1A3WV Arachis hypogaea HOM05D009020 ORTHO05D010722 4.1e-16 89.0 151 37.7
arahy.Tifrunner.gnm1.ann1.TW3CAC Arachis hypogaea HOM05D009020 ORTHO05D010722 5.3e-16 88.6 151 37.7
TWI15G0239 Tripterygium wilfordii HOM05D009020 ORTHO05D010722 5.3e-16 88.6 151 36.4
Psat5g127160 Pisum sativum HOM05D009020 ORTHO05D010722 2.0e-15 86.7 172 35.5
TAR299G0002 Trochodendron aralioides HOM05D009020 ORTHO05D010722 1.0e-14 84.3 141 38.3
Rhsim03G0140500 Rhododendron simsii HOM05D009020 ORTHO05D010722 1.3e-14 84.0 136 39.0
Medtr2g021200 Medicago truncatula HOM05D009020 ORTHO05D010722 2.9e-14 82.8 100 48.0
TAR369G0540 Trochodendron aralioides HOM05D009020 ORTHO05D010722 2.9e-14 82.8 144 36.1
Actinidia29679 Actinidia chinensis HOM05D009020 ORTHO05D010722 8.4e-14 81.3 135 37.8
TAR369G0652 Trochodendron aralioides HOM05D009020 ORTHO05D010722 3.2e-13 79.3 140 37.1
TAR299G0005 Trochodendron aralioides HOM05D009020 ORTHO05D010722 3.5e-12 75.9 141 37.6
Gohir.A08G218200 Gossypium hirsutum HOM05D021924 ORTHO05D010722 4.6e-12 75.5 132 36.4
Gohir.D08G235401 Gossypium hirsutum HOM05D021924 ORTHO05D010722 2.3e-11 73.2 132 37.1
Gorai.004G250000 Gossypium raimondii HOM05D021924 ORTHO05D010722 2.3e-11 73.2 132 37.1
TAR369G0756 Trochodendron aralioides HOM05D009020 ORTHO05D010722 3.9e-11 72.4 113 35.4
TAR299G0003 Trochodendron aralioides HOM05D009020 ORTHO05D010722 5.1e-11 72.0 150 32.7
TAR369G0090 Trochodendron aralioides HOM05D009020 ORTHO05D010722 5.1e-11 72.0 150 32.7
FvH4_7g24042 Fragaria vesca HOM05D026061 ORTHO05D029373 3.3e-10 69.3 180 32.2
FvH4_6g44890 Fragaria vesca HOM05D017350 ORTHO05D010722 4.3e-10 68.9 172 31.4
FAN14G0639 Fragaria x ananassa HOM05D017350 ORTHO05D010722 4.3e-10 68.9 172 31.4
FAN05G2309 Fragaria x ananassa HOM05D017350 ORTHO05D010722 7.4e-10 68.2 169 29.0
FAN02G2789 Fragaria x ananassa HOM05D017350 ORTHO05D010722 1.6e-09 67.0 172 31.4
THA.LOC104810075 Tarenaya hassleriana HOM05D009750 ORTHO05D011861 1.6e-09 67.0 130 33.1
FAN01G3032 Fragaria x ananassa HOM05D026061 ORTHO05D029373 2.2e-09 66.6 177 31.6
FvH4_1g11890 Fragaria vesca HOM05D017350 ORTHO05D010722 3.7e-09 65.9 176 29.5
Solyc08g062170.1 Solanum lycopersicum HOM05D014753 ORTHO05D016888 3.7e-09 65.9 127 35.4
BcaC06g31535 Brassica carinata HOM05D009750 ORTHO05D011861 5.3e-08 62.0 109 33.0
BolC4t26563H Brassica oleracea HOM05D009750 ORTHO05D011861 3.4e-07 59.3 118 31.4
A04p15470 Brassica napus HOM05D009750 ORTHO05D011861 4.5e-07 58.9 118 30.5
Aqoxy4G02655 Aquilegia oxysepala HOM05D009020 ORTHO05D010722 1.0e-06 57.8 85 38.8
BcaC02g08863 Brassica carinata HOM05D009750 ORTHO05D011861 1.0e-06 57.8 118 30.5
C04p49720 Brassica napus HOM05D009750 ORTHO05D011861 1.0e-06 57.8 118 30.5
AL4G37270 Arabidopsis lyrata HOM05D009750 ORTHO05D011861 2.9e-06 56.2 159 34.6
Solyc09g061910.2 Solanum lycopersicum HOM05D014753 ORTHO05D016888 2.9e-06 56.2 119 34.5
Sopen09g024990 Solanum pennellii HOM05D014753 ORTHO05D016888 5.0e-06 55.5 119 34.5
BraA04t17183Z Brassica rapa HOM05D009750 ORTHO05D011861 6.5e-06 55.1 109 31.2
TAR369G0894 Trochodendron aralioides HOM05D000140 ORTHO05D016445 6.5e-06 55.1 54 51.9
AL7G51424 Arabidopsis lyrata HOM05D009750 ORTHO05D011861 8.5e-06 54.7 123 32.5
Thhalv10028071m.g Eutrema salsugineum HOM05D009750 ORTHO05D011861 8.5e-06 54.7 112 31.2


User provided reference genes

Program Settings