Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 6.2e-242 840.5 459 100.0
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 1.5e-232 809.3 459 96.5
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 1.9e-182 642.9 449 81.5
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 1.4e-164 583.6 461 75.1
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 4.1e-161 572.0 463 72.4
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 4.5e-160 568.5 461 72.9
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 3.8e-159 565.5 471 71.1
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 5.0e-159 565.1 457 74.4
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 1.6e-157 560.1 460 73.5
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 2.7e-157 559.3 460 72.6
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 6.1e-157 558.1 461 72.9
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 2.3e-156 556.2 461 71.8
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 3.4e-155 552.4 472 70.3
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 1.1e-153 547.4 462 71.6
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 7.7e-152 541.2 461 72.5
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 1.0e-151 540.8 462 70.8
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 5.5e-150 535.0 461 69.6
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 6.8e-148 528.1 459 69.5
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 8.8e-148 527.7 458 68.6
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 3.4e-147 525.8 461 70.5
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 4.4e-147 525.4 458 68.3
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 5.7e-147 525.0 458 68.3
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 1.7e-146 523.5 457 69.6
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 3.7e-146 522.3 458 67.7
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 2.4e-145 519.6 458 69.0
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.1e-145 519.2 385 77.9
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 1.6e-144 516.9 463 68.3
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 8.6e-143 511.1 460 69.1
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 3.6e-141 505.8 465 66.5
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 3.6e-141 505.8 495 60.6
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 6.1e-141 505.0 460 68.7
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 6.8e-140 501.5 460 68.5
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 7.5e-139 498.0 457 66.7
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 4.1e-137 492.3 461 64.4
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 1.6e-136 490.3 459 63.4
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 1.6e-136 490.3 460 64.8
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 7.8e-136 488.0 459 65.8
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.0e-135 487.6 431 68.0
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 2.5e-134 483.0 432 67.8
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 1.2e-133 480.7 505 61.8
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 1.0e-132 477.6 460 64.8
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 5.2e-132 475.3 461 65.1
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 1.2e-131 474.2 448 65.6
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 1.2e-131 474.2 416 68.5
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 1.5e-131 473.8 416 68.5
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 7.5e-131 471.5 432 68.1
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 7.5e-131 471.5 416 68.0
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 1.3e-130 470.7 433 66.7
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 2.9e-130 469.5 462 63.6
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 4.9e-130 468.8 459 64.5
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.1e-129 467.6 460 64.1
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.4e-129 467.2 449 63.7
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 4.1e-129 465.7 425 67.1
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 5.4e-129 465.3 449 63.9
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 7.0e-129 464.9 431 66.4
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 2.7e-128 463.0 459 64.1
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 1.7e-127 460.3 433 67.2
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 1.1e-126 457.6 461 62.9
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 1.6e-125 453.8 450 64.0
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 3.6e-125 452.6 429 66.0
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 4.7e-125 452.2 456 62.7
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 1.1e-124 451.1 339 79.1
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 4.4e-123 445.7 429 63.4
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 8.3e-122 441.4 457 63.7
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 1.1e-121 441.0 442 58.8
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 1.1e-118 431.0 431 61.7
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 1.1e-116 424.5 433 61.2
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 1.5e-115 420.6 451 62.1
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 1.5e-115 420.6 454 61.5
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 2.6e-115 419.9 449 62.1
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 2.6e-115 419.9 409 67.7
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 4.4e-115 419.1 416 64.4
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 2.2e-114 416.8 449 62.6
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 3.2e-113 412.9 386 68.4
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 3.2e-113 412.9 436 61.5
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 7.1e-113 411.8 372 70.7
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 4.6e-112 409.1 387 68.2
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 1.0e-111 407.9 464 60.1
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 1.3e-111 407.5 373 70.8
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 5.1e-111 405.6 387 68.0
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 6.6e-111 405.2 374 70.1
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 1.2e-109 401.0 387 67.4
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 1.2e-109 401.0 387 67.4
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 1.6e-109 400.6 383 67.4
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 1.6e-109 400.6 375 69.9
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 1.6e-109 400.6 375 69.9
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 6.2e-109 398.7 298 72.5
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 1.8e-108 397.1 402 61.9
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 2.4e-108 396.7 458 57.9
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 6.9e-108 395.2 384 64.6
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.2e-107 394.4 384 63.8
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 1.5e-107 394.0 359 69.9
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 5.8e-107 392.1 359 70.5
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 7.8e-104 381.7 382 64.7
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 1.9e-102 377.1 379 63.6
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 7.3e-102 375.2 260 78.8
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 9.6e-102 374.8 415 59.5
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 2.8e-101 373.2 330 71.8
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 2.8e-101 373.2 396 60.9
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 1.1e-100 371.3 447 55.9
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 5.3e-100 369.0 436 58.3
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 1.2e-88 331.3 261 69.7
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 1.8e-87 327.4 379 60.4
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 4.9e-82 309.3 276 70.7
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 8.7e-79 298.5 452 44.0
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 7.4e-78 295.4 203 78.3
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 9.0e-76 288.5 238 76.9
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 1.7e-74 284.3 348 57.2
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 1.9e-70 270.8 325 54.8
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 3.7e-69 266.5 228 68.0
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 1.9e-57 227.6 334 48.2
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.1e-56 224.2 321 51.4
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 1.5e-54 218.0 314 47.5
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 3.3e-54 216.9 342 45.9
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.4e-52 211.5 224 51.3
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 2.4e-52 210.7 137 83.2
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 1.4e-39 168.3 123 72.4
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 1.2e-38 165.2 261 39.8
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 1.7e-34 151.4 210 42.4
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 8.9e-31 139.0 77 94.8
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.6e-26 122.9 160 55.6
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 1.0e-18 99.0 60 81.7
FAN28G0752 Fragaria x ananassa HOM05D006243 ORTHO05D007688 8.9e-15 85.9 112 43.8
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 1.5e-14 85.1 171 38.6
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 4.9e-13 80.1 201 34.3
unitig_736.g22595 Utricularia gibba HOM05D006243 ORTHO05D007688 1.1e-09 68.9 147 35.4


User provided reference genes

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