Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007804 Carpinus fangiana HOM05D006714 ORTHO05D008103 0.0e+00 1502.6 752 100.0
Haze_14269 Corylus avellana HOM05D006714 ORTHO05D008103 0.0e+00 1355.1 809 86.8
QL10p014398 Quercus lobata HOM05D006714 ORTHO05D008103 1.1e-243 847.0 951 53.7
QL02p058308 Quercus lobata HOM05D006714 ORTHO05D008103 1.0e-238 830.5 1005 51.0
RcHm_v2.0_Chr2g0123431 Rosa chinensis HOM05D006714 ORTHO05D008103 4.0e-190 669.1 747 51.7
MD15G1138100 Malus domestica HOM05D006714 ORTHO05D008103 1.1e-184 651.0 741 52.4
Dinv28198 Davidia involucrata HOM05D006714 ORTHO05D008103 1.6e-178 630.6 634 56.2
CiPaw.03G072500 Carya illinoinensis HOM05D006714 ORTHO05D008103 2.3e-177 626.7 435 73.3
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 7.1e-171 605.1 726 49.4
FvH4_1g25400 Fragaria vesca HOM05D006714 ORTHO05D008103 2.1e-170 603.6 644 52.5
GSVIVG01030704001 Vitis vinifera HOM05D006714 ORTHO05D008103 3.5e-170 602.8 749 48.1
FAN23G2031 Fragaria x ananassa HOM05D006714 ORTHO05D008103 1.3e-164 584.3 767 47.5
FAN26G1526 Fragaria x ananassa HOM05D006714 ORTHO05D008103 8.5e-164 581.6 761 47.6
Duzib211G0559 Durio zibethinus HOM05D006714 ORTHO05D008103 6.1e-162 575.5 656 50.0
Ciclev10011142m.g Citrus clementina HOM05D006714 ORTHO05D008103 1.0e-156 558.1 818 43.3
Thecc.04G114100 Theobroma cacao HOM05D006714 ORTHO05D008103 7.9e-154 548.5 628 50.2
CANSAT78G1609 Cannabis sativa HOM05D006714 ORTHO05D008103 1.8e-153 547.4 659 50.4
Gohir.A07G178400 Gossypium hirsutum HOM05D006714 ORTHO05D008103 5.7e-152 542.3 658 49.2
Gohir.D07G184700 Gossypium hirsutum HOM05D006714 ORTHO05D008103 1.3e-151 541.2 657 49.2
Gorai.001G205100 Gossypium raimondii HOM05D006714 ORTHO05D008103 4.1e-150 536.2 688 47.7
Rhsim08G0018800 Rhododendron simsii HOM05D006714 ORTHO05D008103 7.7e-149 531.9 763 45.7
arahy.Tifrunner.gnm1.ann1.ZV72ZC Arachis hypogaea HOM05D006714 ORTHO05D008103 9.4e-147 525.0 605 49.3
TWI77G0889 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 2.7e-146 523.5 614 49.3
Potri.017G130400 Populus trichocarpa HOM05D006714 ORTHO05D008103 3.6e-146 523.1 648 45.1
Prupe.4G281200 Prunus persica HOM05D006714 ORTHO05D008103 8.0e-146 521.9 653 50.2
arahy.Tifrunner.gnm1.ann1.E1Z4YV Arachis hypogaea HOM05D006714 ORTHO05D008103 5.2e-145 519.2 605 48.9
TAR629G3521 Trochodendron aralioides HOM05D006714 ORTHO05D008103 2.6e-144 516.9 974 37.5
Nn4g24295 Nelumbo nucifera HOM05D006714 ORTHO05D008103 9.7e-144 515.0 634 48.3
Hma1.2p1_0158F.1_g070140 Hydrangea macrophylla HOM05D006714 ORTHO05D008103 1.6e-141 507.7 616 49.0
Manes.02G077300 Manihot esculenta HOM05D006714 ORTHO05D008103 2.0e-141 507.3 760 41.6
Sabra17G0108600 Salix brachista HOM05D006714 ORTHO05D008103 1.0e-140 505.0 655 44.3
CsaV3_5G024210 Cucumis sativus L. HOM05D006714 ORTHO05D008103 1.9e-139 500.7 589 49.4
Ca_05830_v3 Cicer arietinum L. HOM05D006714 ORTHO05D008103 2.7e-138 496.9 578 49.3
Medtr5g078170 Medicago truncatula HOM05D006714 ORTHO05D008103 2.0e-136 490.7 590 47.6
LjContig00141g0000721 Lotus japonicus HOM05D006714 ORTHO05D008103 5.7e-136 489.2 524 52.5
Dinv19038 Davidia involucrata HOM05D006714 ORTHO05D008103 2.8e-135 486.9 691 46.3
Hund13103 Selenicereus undatus HOM05D006714 ORTHO05D008103 1.1e-134 485.0 615 46.7
vmacro18531 Vaccinium macrocarpon HOM05D006714 ORTHO05D008103 1.0e-132 478.4 782 40.4
ClCG01G008770 Citrullus lanatus HOM05D006714 ORTHO05D008103 5.0e-132 476.1 565 48.5
Cc07_g13380 Coffea canephora HOM05D006714 ORTHO05D008103 5.5e-131 472.6 797 41.4
Lalb_Chr04g0251401 Lupinus albus HOM05D006714 ORTHO05D008103 1.6e-130 471.1 560 50.0
TWI74G0031 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 1.6e-130 471.1 485 53.2
Nitab4.5_0000201g0160 Nicotiana tabacum HOM05D006714 ORTHO05D008103 6.1e-130 469.2 571 48.5
VMungo0647G1195 Vigna mungo HOM05D006714 ORTHO05D008103 1.5e-128 464.5 578 46.9
TPR.G8266 Trifolium pratense HOM05D006714 ORTHO05D008103 3.4e-128 463.4 599 45.1
SalBow5G2523 Salvia bowleyana HOM05D006714 ORTHO05D008103 6.3e-127 459.1 419 56.8
Sed0011157 Sechium edule HOM05D006714 ORTHO05D008103 4.1e-126 456.4 574 47.0
SGA_v2.0_scaffold45G17176 Striga asiatica HOM05D006714 ORTHO05D008103 6.1e-122 442.6 567 46.2
Oeu032319.1 Olea europaea HOM05D006714 ORTHO05D008103 1.4e-121 441.4 320 67.8
Migut.K00904 Erythranthe guttata HOM05D006714 ORTHO05D008103 1.5e-120 438.0 597 45.7
HanXRQChr15g0483231 Helianthus annuus HOM05D006714 ORTHO05D008103 1.3e-119 434.9 549 48.1
EL10Ac2g03178 Beta vulgaris HOM05D006714 ORTHO05D008103 1.7e-119 434.5 562 46.6
ECA247G1081 Erigeron canadensis HOM05D006714 ORTHO05D008103 6.3e-119 432.6 552 46.6
DCAR_014171 Daucus carota HOM05D006714 ORTHO05D008103 1.4e-118 431.4 565 47.3
PGR031G2162 Punica granatum HOM05D006714 ORTHO05D008103 1.8e-118 431.0 559 46.2
Nitab4.5_0006893g0050 Nicotiana tabacum HOM05D006714 ORTHO05D008103 3.1e-118 430.3 583 45.3
Cpa.g.sc116.59 Carica papaya HOM05D006714 ORTHO05D008103 9.5e-115 418.7 593 43.5
Aqoxy1G00382 Aquilegia oxysepala HOM05D006714 ORTHO05D008103 2.1e-114 417.5 403 55.1
PSO017G5883 Papaver somniferum HOM05D006714 ORTHO05D008103 8.0e-114 415.6 464 50.4
AUR62018218 Chenopodium quinoa HOM05D006714 ORTHO05D008103 3.5e-109 400.2 400 53.0
AT5G16610 Arabidopsis thaliana HOM05D006714 ORTHO05D008103 1.5e-107 394.8 593 42.0
CAN.G222.36 Capsicum annuum HOM05D006714 ORTHO05D008103 3.3e-107 393.7 379 55.4
Solyc11g011060.3 Solanum lycopersicum HOM05D006714 ORTHO05D008103 4.3e-107 393.3 410 51.7
Sopen11g005830 Solanum pennellii HOM05D006714 ORTHO05D008103 4.3e-107 393.3 410 51.7
THA.LOC104820908 Tarenaya hassleriana HOM05D006714 ORTHO05D008103 1.6e-106 391.3 575 42.4
Aa31LG11G13040 Aethionema arabicum HOM05D006714 ORTHO05D008103 6.2e-106 389.4 534 44.2
Carub.0006s1481 Capsella rubella HOM05D006714 ORTHO05D008103 6.2e-106 389.4 352 57.1
AUR62037796 Chenopodium quinoa HOM05D006714 ORTHO05D008103 1.8e-105 387.9 326 59.5
Glyma.14G214400 Glycine max HOM05D006714 ORTHO05D008103 2.3e-105 387.5 517 46.0
Thhalv10012945m.g Eutrema salsugineum HOM05D006714 ORTHO05D008103 5.2e-105 386.3 523 43.8
CARHR196610 Cardamine hirsuta HOM05D006714 ORTHO05D008103 2.0e-104 384.4 347 56.5
AL6G27570 Arabidopsis lyrata HOM05D006714 ORTHO05D008103 1.9e-102 377.9 541 43.3
Sp6g27560 Schrenkiella parvula HOM05D006714 ORTHO05D008103 1.2e-101 375.2 323 58.8
BraA10t44322Z Brassica rapa HOM05D006714 ORTHO05D008103 3.9e-100 370.2 560 42.0
Lsat_1_v5_gn_3_63641 Lactuca sativa HOM05D006714 ORTHO05D008103 3.9e-100 370.2 529 44.8
A10p22600 Brassica napus HOM05D006714 ORTHO05D008103 1.2e-98 365.2 562 40.6
C09p60510 Brassica napus HOM05D006714 ORTHO05D008103 6.2e-98 362.8 578 40.7
BolC9t58884H Brassica oleracea HOM05D006714 ORTHO05D008103 3.1e-97 360.5 576 40.6
HPP92_011112 Vanilla planifolia HOM05D006714 ORTHO05D008103 4.9e-95 353.2 420 48.3
SalBow5G2948 Salvia bowleyana HOM05D006714 ORTHO05D008103 1.1e-94 352.1 408 49.0
ATR0171G009 Amborella trichopoda HOM05D006714 ORTHO05D008103 1.2e-93 348.6 341 53.7
HPP92_011097 Vanilla planifolia HOM05D006714 ORTHO05D008103 2.7e-93 347.4 328 55.2
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 7.3e-91 339.3 322 55.9
BcaB08g36834 Brassica carinata HOM05D006714 ORTHO05D008103 9.5e-91 339.0 562 40.2
Sc11g0004560 Simmondsia chinensis HOM05D006714 ORTHO05D008103 2.0e-88 331.3 666 37.8
Os03g0221300 Oryza sativa ssp. japonica HOM05D006714 ORTHO05D008103 7.1e-86 322.8 296 56.8
QL93p0100_0723 Quercus lobata HOM05D006714 ORTHO05D008103 2.1e-85 321.2 292 63.7
Atru.chr1.1942 Acer truncatum HOM05D006714 ORTHO05D008103 5.1e-84 316.6 209 70.8
CDE07G1834 Ceratophyllum demersum HOM05D006714 ORTHO05D008103 4.3e-83 313.5 412 44.2
Peaxi162Scf00305g00412 Petunia axillaris HOM05D006714 ORTHO05D008103 6.2e-82 309.7 216 68.1
unitig_748.g8636 Utricularia gibba HOM05D006714 ORTHO05D008103 3.4e-80 303.9 381 45.1
PSO478G0421 Papaver somniferum HOM05D006714 ORTHO05D008103 4.4e-80 303.5 370 48.4
PSO063G0106 Papaver somniferum HOM05D006714 ORTHO05D008103 7.6e-80 302.8 237 62.0
QL93p0100_0715 Quercus lobata HOM05D006714 ORTHO05D008103 2.1e-66 258.1 262 59.5
Actinidia28805 Actinidia chinensis HOM05D006714 ORTHO05D008103 3.7e-66 257.3 177 71.8
Phvul.008G236600 Phaseolus vulgaris HOM05D006714 ORTHO05D008103 1.8e-65 255.0 434 40.3
Psat2g047840 Pisum sativum HOM05D006714 ORTHO05D008103 1.5e-64 251.9 373 42.1
MELO3C022869.2 Cucumis melo HOM05D006714 ORTHO05D008103 4.5e-64 250.4 573 34.6
Actinidia35727 Actinidia chinensis HOM05D006714 ORTHO05D008103 2.9e-63 247.7 535 35.1
Pp3c23_20330 Physcomitrium patens HOM05D006714 ORTHO05D008103 1.1e-62 245.7 260 46.9
Pp3c24_16350 Physcomitrium patens HOM05D006714 ORTHO05D008103 1.9e-62 245.0 261 48.3
CBR_g12792 Chara braunii HOM05D006714 ORTHO05D008103 2.9e-55 221.1 312 38.5
SEGI_28129 Sequoiadendron giganteum HOM05D006714 ORTHO05D008103 8.4e-55 219.5 376 39.6
CSS0036373 Camellia sinensis var. sinensis HOM05D006714 ORTHO05D008103 7.1e-54 216.5 301 46.5
QL93p0100_0731 Quercus lobata HOM05D006714 ORTHO05D008103 9.3e-54 216.1 117 84.6
Eucgr.F02863 Eucalyptus grandis HOM05D006714 ORTHO05D008103 1.6e-50 205.3 119 78.2
CSS0024067 Camellia sinensis var. sinensis HOM05D006714 ORTHO05D008103 8.2e-50 203.0 296 46.3
SMO340G0205 Selaginella moellendorffii HOM05D006714 ORTHO05D008103 4.1e-49 200.7 184 48.4
Atru.chr1.1941 Acer truncatum HOM05D006714 ORTHO05D008103 5.1e-44 183.7 384 38.3
Peaxi162Scf00305g00413 Petunia axillaris HOM05D006714 ORTHO05D008103 2.5e-30 138.3 166 48.2
CiPaw.03G072400 Carya illinoinensis HOM05D006714 ORTHO05D008103 9.4e-14 83.2 78 61.5
CSS0018819 Camellia sinensis var. sinensis HOM05D060064 ORTHO05D043302 7.7e-08 63.5 102 41.2
CSS0029132 Camellia sinensis var. sinensis HOM05D060064 ORTHO05D043302 7.7e-08 63.5 102 41.2


User provided reference genes

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