Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007791 Carpinus fangiana HOM05D007545 ORTHO05D009579 8.1e-160 567.8 479 100.0
Haze_14281 Corylus avellana HOM05D007545 ORTHO05D009579 2.1e-123 446.8 239 91.2
CiPaw.03G073600 Carya illinoinensis HOM05D007545 ORTHO05D009579 8.2e-96 355.1 241 74.7
TAR371G0190 Trochodendron aralioides HOM05D007545 ORTHO05D009579 2.7e-83 313.5 237 65.4
Prupe.3G166000 Prunus persica HOM05D007545 ORTHO05D009579 3.8e-77 293.1 247 63.6
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 2.5e-76 290.4 249 59.8
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 8.8e-74 282.0 196 68.4
MD17G1268500 Malus domestica HOM05D007545 ORTHO05D009579 2.0e-73 280.8 250 60.8
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 7.5e-73 278.9 238 59.2
Gohir.D08G049200 Gossypium hirsutum HOM05D007545 ORTHO05D009579 3.7e-72 276.6 207 66.2
Gorai.004G048700 Gossypium raimondii HOM05D007545 ORTHO05D009579 1.2e-70 271.6 207 65.2
RcHm_v2.0_Chr3g0491601 Rosa chinensis HOM05D007545 ORTHO05D009579 1.6e-70 271.2 246 58.9
QL08p020033 Quercus lobata HOM05D007545 ORTHO05D009579 1.7e-69 267.7 240 62.1
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 1.7e-69 267.7 240 58.3
MELO3C032020.2 Cucumis melo HOM05D007545 ORTHO05D009579 1.9e-68 264.2 205 63.9
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 6.8e-66 255.8 210 57.1
GSVIVG01030674001 Vitis vinifera HOM05D007545 ORTHO05D009579 3.4e-65 253.4 238 55.5
PSO478G2209 Papaver somniferum HOM05D007545 ORTHO05D009579 1.7e-64 251.1 210 56.2
Aqoxy3G04069 Aquilegia oxysepala HOM05D007545 ORTHO05D009579 2.3e-61 240.7 189 61.9
CANSAT64G1149 Cannabis sativa HOM05D007545 ORTHO05D009579 2.3e-61 240.7 221 57.9
Sed0004069 Sechium edule HOM05D007545 ORTHO05D009579 2.5e-60 237.3 226 56.6
Migut.K00924 Erythranthe guttata HOM05D007545 ORTHO05D009579 5.2e-58 229.6 207 57.0
Nitab4.5_0001650g0170 Nicotiana tabacum HOM05D007545 ORTHO05D009579 4.4e-57 226.5 254 51.2
Cpa.g.sc340.2 Carica papaya HOM05D007545 ORTHO05D009579 5.7e-57 226.1 222 54.5
SGA_v2.0_scaffold45G17151 Striga asiatica HOM05D007545 ORTHO05D009579 5.7e-57 226.1 221 52.0
Lalb_Chr10g0104281 Lupinus albus HOM05D007545 ORTHO05D009579 7.5e-57 225.7 200 58.0
FAN26G0753 Fragaria x ananassa HOM05D007545 ORTHO05D009579 9.8e-57 225.3 204 59.3
Oeu030299.1 Olea europaea HOM05D007545 ORTHO05D009579 1.7e-56 224.6 200 57.5
SalBow5G0095 Salvia bowleyana HOM05D007545 ORTHO05D009579 2.9e-56 223.8 240 50.8
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 8.3e-56 222.2 243 49.8
FAN19G0914 Fragaria x ananassa HOM05D007545 ORTHO05D009579 1.8e-55 221.1 204 59.3
Hma1.2p1_0158F.1_g070060 Hydrangea macrophylla HOM05D007545 ORTHO05D009579 2.4e-55 220.7 244 47.5
Ciclev10011347m.g Citrus clementina HOM05D007545 ORTHO05D009579 3.2e-55 220.3 238 51.3
Eucgr.F02875 Eucalyptus grandis HOM05D007545 ORTHO05D009579 7.0e-55 219.2 202 54.0
ATR0661G317 Amborella trichopoda HOM05D007545 ORTHO05D009579 1.6e-54 218.0 216 52.8
Rhsim10G0178600 Rhododendron simsii HOM05D007545 ORTHO05D009579 3.9e-53 213.4 199 56.3
Medtr5g077930 Medicago truncatula HOM05D007545 ORTHO05D009579 5.0e-53 213.0 218 50.5
Lsat_1_v5_gn_2_68461 Lactuca sativa HOM05D007545 ORTHO05D009579 6.6e-53 212.6 219 51.1
Sp1g08270 Schrenkiella parvula HOM05D001024 ORTHO05D009579 6.6e-53 212.6 240 47.9
Manes.01G119900 Manihot esculenta HOM05D007545 ORTHO05D009579 8.6e-53 212.2 237 49.8
THA.LOC104805633 Tarenaya hassleriana HOM05D007545 ORTHO05D009579 1.1e-52 211.8 223 51.6
TPR.G23654 Trifolium pratense HOM05D007545 ORTHO05D009579 3.3e-52 210.3 221 50.2
C05p07760 Brassica napus HOM05D007545 ORTHO05D009579 1.2e-51 208.4 253 49.0
BolC5t29527H Brassica oleracea HOM05D007545 ORTHO05D009579 1.2e-51 208.4 253 49.0
CARHR009650 Cardamine hirsuta HOM05D007545 ORTHO05D009579 1.0e-50 205.3 247 47.4
Thhalv10007116m.g Eutrema salsugineum HOM05D007545 ORTHO05D009579 1.0e-50 205.3 251 46.2
BraA06t23847Z Brassica rapa HOM05D007545 ORTHO05D009579 1.4e-50 204.9 244 48.8
A06p06360 Brassica napus HOM05D007545 ORTHO05D009579 4.0e-50 203.4 244 48.8
Sed0020460 Sechium edule HOM05D007545 ORTHO05D009579 5.2e-50 203.0 226 51.8
Hund13089 Selenicereus undatus HOM05D007545 ORTHO05D009579 6.8e-50 202.6 210 50.5
AL1G20230 Arabidopsis lyrata HOM05D007545 ORTHO05D009579 1.5e-49 201.4 249 46.2
HanXRQChr14g0457331 Helianthus annuus HOM05D007545 ORTHO05D009579 1.5e-49 201.4 204 51.0
Phvul.008G237700 Phaseolus vulgaris HOM05D007545 ORTHO05D009579 2.6e-49 200.7 215 52.1
Atru.chr1.1983 Acer truncatum HOM05D007545 ORTHO05D009579 3.4e-49 200.3 253 48.2
Carub.0001s0902 Capsella rubella HOM05D007545 ORTHO05D009579 7.5e-49 199.1 250 45.6
AT1G09680 Arabidopsis thaliana HOM05D007545 ORTHO05D009579 1.3e-48 198.4 206 51.0
Glyma.02G243500 Glycine max HOM05D007545 ORTHO05D009579 1.3e-48 198.4 208 51.4
Aa31LG1G5330 Aethionema arabicum HOM05D007545 ORTHO05D009579 4.9e-48 196.4 206 51.9
VMungo0647G0528 Vigna mungo HOM05D007545 ORTHO05D009579 6.4e-48 196.1 204 52.5
Potri.017G131400 Populus trichocarpa HOM05D007545 ORTHO05D009579 1.7e-45 188.0 246 45.1
Sc14g0006910 Simmondsia chinensis HOM05D007545 ORTHO05D009579 1.7e-45 188.0 200 46.5
Nitab4.5_0001088g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 1.1e-44 185.3 201 52.7
ECA238G0700 Erigeron canadensis HOM05D007545 ORTHO05D009579 1.2e-43 181.8 211 47.4
Actinidia06485 Actinidia chinensis HOM05D007545 ORTHO05D009579 3.6e-43 180.3 125 65.6
QL05p016537 Quercus lobata HOM05D007545 ORTHO05D009579 4.7e-43 179.9 208 49.0
PGR004G2599 Punica granatum HOM05D007545 ORTHO05D009579 1.4e-42 178.3 243 46.1
Nn3g18372 Nelumbo nucifera HOM05D007545 ORTHO05D009579 1.5e-41 174.9 114 67.5
Gohir.D11G205366 Gossypium hirsutum HOM05D007545 ORTHO05D009579 1.7e-40 171.4 136 62.5
ClCG05G010640 Citrullus lanatus HOM05D007545 ORTHO05D009579 3.7e-40 170.2 125 62.4
Gohir.A08G039000 Gossypium hirsutum HOM05D007545 ORTHO05D009579 4.6e-38 163.3 118 66.1
CsaV3_3G017850 Cucumis sativus L. HOM05D007545 ORTHO05D009579 1.7e-32 144.8 150 54.7
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 1.1e-31 142.1 202 38.6
Psat2g047200 Pisum sativum HOM05D007545 ORTHO05D009579 9.2e-31 139.0 129 49.6
Lj4C259T9 Lonicera japonica HOM05D007545 ORTHO05D009579 7.3e-28 129.4 115 54.8
Nitab4.5_0004239g0030 Nicotiana tabacum HOM05D007545 ORTHO05D009579 2.8e-27 127.5 117 51.3
Peaxi162Scf00562g00002 Petunia axillaris HOM05D007545 ORTHO05D009579 2.8e-27 127.5 128 50.8
Nitab4.5_0010123g0020 Nicotiana tabacum HOM05D007545 ORTHO05D009579 1.1e-26 125.6 117 51.3
CAN.G222.58 Capsicum annuum HOM05D007545 ORTHO05D009579 2.4e-26 124.4 126 48.4
FvH4_1g30171 Fragaria vesca HOM05D007545 ORTHO05D009579 8.9e-26 122.5 118 61.0
PGSC0003DMG400013237 Solanum tuberosum HOM05D007545 ORTHO05D009579 1.5e-25 121.7 117 49.6
Solyc11g011410.3 Solanum lycopersicum HOM05D007545 ORTHO05D009579 1.3e-24 118.6 117 47.9
ATR0753G016 Amborella trichopoda HOM05D007545 ORTHO05D009579 2.9e-24 117.5 114 49.1
Sopen11g006210 Solanum pennellii HOM05D007545 ORTHO05D009579 1.1e-23 115.5 117 47.0
Sabra17G0109500 Salix brachista HOM05D007545 ORTHO05D009579 4.2e-23 113.6 125 44.8
Nitab4.5_0001650g0140 Nicotiana tabacum HOM05D007545 ORTHO05D009579 7.1e-23 112.8 126 46.0
Ca_05835_v3 Cicer arietinum L. HOM05D007545 ORTHO05D009579 2.1e-22 111.3 104 47.1
Gorai.007G220500 Gossypium raimondii HOM05D007545 ORTHO05D009579 1.3e-21 108.6 135 46.7
Zm00001eb080530 Zea mays HOM05D007545 ORTHO05D009579 4.8e-19 100.1 205 34.1
COL.COLO4_13423 Corchorus olitorius HOM05D007545 ORTHO05D009579 6.2e-19 99.8 72 59.7
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 4.2e-15 87.0 179 30.2
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 2.7e-14 84.3 154 31.8
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 7.9e-14 82.8 199 27.6
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 1.8e-13 81.6 151 30.5
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 3.9e-13 80.5 151 29.8
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 3.9e-13 80.5 151 28.5
MBI05_g05281_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D009847 8.7e-13 79.3 152 30.3
Migut.L00784 Erythranthe guttata HOM05D007496 ORTHO05D009479 5.6e-12 76.6 154 27.9
MELO3C033967.2 Cucumis melo HOM05D007496 ORTHO05D009479 9.6e-12 75.9 150 28.0
CsaV3_5G017450 Cucumis sativus L. HOM05D007496 ORTHO05D009479 9.6e-12 75.9 150 28.0
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 2.8e-11 74.3 176 29.5
Glyma.08G090700 Glycine max HOM05D007496 ORTHO05D009479 1.8e-10 71.6 151 27.8
FAN23G0923 Fragaria x ananassa HOM05D007347 ORTHO05D009296 3.1e-10 70.9 190 27.4
FAN26G2104 Fragaria x ananassa HOM05D007347 ORTHO05D009296 3.1e-10 70.9 190 27.4
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 4.0e-10 70.5 208 26.0
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 6.9e-10 69.7 195 26.2
FAN23G0930 Fragaria x ananassa HOM05D007347 ORTHO05D009296 1.2e-09 68.9 190 26.8
FvH4_1g20970 Fragaria vesca HOM05D007347 ORTHO05D009296 1.5e-09 68.6 190 26.8
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 1.5e-09 68.6 216 27.3
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 2.0e-09 68.2 216 27.3
TAR371G0226 Trochodendron aralioides HOM05D007347 ORTHO05D009296 2.6e-09 67.8 166 27.1
TAR629G3514 Trochodendron aralioides HOM05D007347 ORTHO05D009296 2.6e-09 67.8 166 27.1
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 3.4e-09 67.4 176 26.7
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 3.4e-09 67.4 216 26.9
RcHm_v2.0_Chr6g0269561 Rosa chinensis HOM05D007347 ORTHO05D009296 4.5e-09 67.0 162 29.6
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 5.8e-09 66.6 173 24.3
RcHm_v2.0_Chr2g0114451 Rosa chinensis HOM05D007347 ORTHO05D009296 5.8e-09 66.6 160 30.0
Zm00001eb080520 Zea mays HOM05D007545 ORTHO05D009579 7.6e-09 66.2 124 33.1
FAN19G1358 Fragaria x ananassa HOM05D007347 ORTHO05D009296 9.9e-09 65.9 190 26.3
SEGI_12665 Sequoiadendron giganteum HOM05D007455 ORTHO05D009431 9.9e-09 65.9 159 29.6
Dinv28181 Davidia involucrata HOM05D007545 ORTHO05D009579 1.3e-08 65.5 33 78.8
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 1.7e-08 65.1 150 28.7
HPP92_026949 Vanilla planifolia HOM05D007545 ORTHO05D009579 1.7e-08 65.1 77 37.7
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 2.2e-08 64.7 212 26.9
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 2.9e-08 64.3 150 28.7
Atru.chr10.2229 Acer truncatum HOM05D002890 ORTHO05D009847 3.8e-08 63.9 202 26.2
Ciclev10014539m.g Citrus clementina HOM05D002890 ORTHO05D009847 4.9e-08 63.5 199 24.1
Duzib235G0255 Durio zibethinus HOM05D002890 ORTHO05D009847 4.9e-08 63.5 151 25.8
Sp6g17720 Schrenkiella parvula HOM05D007390 ORTHO05D009114 4.9e-08 63.5 148 29.7
VMungo0251G1188 Vigna mungo HOM05D007496 ORTHO05D009479 4.9e-08 63.5 151 25.8
COL.COLO4_27514 Corchorus olitorius HOM05D007496 ORTHO05D009479 6.4e-08 63.2 136 28.7
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 6.4e-08 63.2 156 25.0
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 8.4e-08 62.8 182 25.8
MD15G1324700 Malus domestica HOM05D007347 ORTHO05D009296 8.4e-08 62.8 150 28.7
Nitab4.5_0007154g0010 Nicotiana tabacum HOM05D007347 ORTHO05D009296 8.4e-08 62.8 196 23.5
CARHR144810 Cardamine hirsuta HOM05D007496 ORTHO05D009479 1.1e-07 62.4 121 32.2
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.1e-07 62.4 178 26.4
Potri.011G003700 Populus trichocarpa HOM05D002890 ORTHO05D009847 1.9e-07 61.6 199 25.6
TPR.G8243 Trifolium pratense HOM05D007291 ORTHO05D009038 1.9e-07 61.6 174 26.4
ATR0751G228 Amborella trichopoda HOM05D007390 ORTHO05D009114 2.4e-07 61.2 147 29.3
Phvul.002G186700 Phaseolus vulgaris HOM05D007496 ORTHO05D009479 3.2e-07 60.8 145 26.2
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 4.2e-07 60.5 140 27.1
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 4.2e-07 60.5 121 29.8
Dinv13895 Davidia involucrata HOM05D002975 ORTHO05D003564 5.5e-07 60.1 179 27.9
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 5.5e-07 60.1 195 26.7
CiPaw.03G007800 Carya illinoinensis HOM05D007347 ORTHO05D009296 7.1e-07 59.7 184 26.6
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 9.3e-07 59.3 139 24.5
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 9.3e-07 59.3 137 29.2
Ca_00776_v3 Cicer arietinum L. HOM05D000091 ORTHO05D009038 1.2e-06 58.9 150 28.0
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 1.6e-06 58.5 222 26.6
Aa31LG1G3060 Aethionema arabicum HOM05D002890 ORTHO05D009847 1.6e-06 58.5 203 25.6
A10p13050 Brassica napus HOM05D007390 ORTHO05D009114 1.6e-06 58.5 148 29.1
TWI31G0517 Tripterygium wilfordii HOM05D006858 ORTHO05D008767 1.6e-06 58.5 152 27.0
Dinv34879 Davidia involucrata HOM05D007347 ORTHO05D009296 2.1e-06 58.2 161 27.3
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 2.1e-06 58.2 222 26.6
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 2.1e-06 58.2 219 25.6
BcaB08g35944 Brassica carinata HOM05D007390 ORTHO05D009114 3.5e-06 57.4 148 29.1
BcaB08g35947 Brassica carinata HOM05D007390 ORTHO05D009114 3.5e-06 57.4 148 29.1
BcaC04g20197 Brassica carinata HOM05D007390 ORTHO05D009114 3.5e-06 57.4 148 29.1
BcaC06g31248 Brassica carinata HOM05D007496 ORTHO05D009479 3.5e-06 57.4 230 24.3
C09p46770 Brassica napus HOM05D007390 ORTHO05D009114 3.5e-06 57.4 148 29.1
BraA10t43400Z Brassica rapa HOM05D007390 ORTHO05D009114 3.5e-06 57.4 148 29.1
Psat4g145840 Pisum sativum HOM05D007347 ORTHO05D009296 3.5e-06 57.4 183 23.0
Thecc.02G296100 Theobroma cacao HOM05D007496 ORTHO05D009479 3.5e-06 57.4 124 29.0
BolC9t57528H Brassica oleracea HOM05D007390 ORTHO05D009114 4.6e-06 57.0 148 28.4
CDE07G1026 Ceratophyllum demersum HOM05D007545 ORTHO05D009579 4.6e-06 57.0 116 31.9
Prupe.6G186200 Prunus persica HOM05D007347 ORTHO05D009296 4.6e-06 57.0 152 26.3
QL06p007153 Quercus lobata HOM05D007347 ORTHO05D009296 4.6e-06 57.0 162 24.7
Actinidia18106 Actinidia chinensis HOM05D007347 ORTHO05D009296 6.0e-06 56.6 157 28.0
ATR1159G005 Amborella trichopoda HOM05D006931 ORTHO05D008782 6.0e-06 56.6 145 25.5
CsaV3_5G013240 Cucumis sativus L. HOM05D007347 ORTHO05D009296 6.0e-06 56.6 162 24.7
ECA234G1772 Erigeron canadensis HOM05D006858 ORTHO05D008767 6.0e-06 56.6 148 27.0
Manes.16G125800 Manihot esculenta HOM05D007291 ORTHO05D009038 6.0e-06 56.6 138 26.8
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 7.9e-06 56.2 179 27.9
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 7.9e-06 56.2 175 25.1


User provided reference genes

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