Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.4e-86 322.8 145 100.0
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.3e-80 301.2 145 91.7
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.7e-79 297.7 145 91.7
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 3.0e-78 295.0 145 91.7
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.7e-74 282.0 145 86.2
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.5e-74 281.6 145 86.2
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 1.3e-73 279.6 137 89.8
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 3.6e-71 271.6 137 87.6
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 4.9e-68 261.2 134 84.3
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.1e-67 260.0 135 80.0
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 4.1e-67 258.1 137 80.3
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 7.0e-67 257.3 136 79.4
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 1.2e-66 256.5 141 78.7
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 2.0e-66 255.8 135 79.3
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 3.5e-66 255.0 135 82.2
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 1.0e-65 253.4 136 78.7
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 1.0e-65 253.4 134 81.3
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 1.7e-65 252.7 145 75.9
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 3.0e-65 251.9 134 80.6
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 3.0e-65 251.9 134 80.6
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 5.0e-65 251.1 130 82.3
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 5.0e-65 251.1 136 77.9
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 6.6e-65 250.8 128 85.9
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 6.6e-65 250.8 134 80.6
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 2.5e-64 248.8 141 75.9
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 4.3e-64 248.1 134 79.1
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 4.3e-64 248.1 136 75.7
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 4.3e-64 248.1 145 76.6
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 5.6e-64 247.7 136 76.5
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 7.3e-64 247.3 136 75.7
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 7.3e-64 247.3 137 77.4
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 9.5e-64 246.9 133 81.2
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.2e-63 246.5 136 77.2
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.6e-63 246.1 141 74.5
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 1.6e-63 246.1 137 76.6
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 2.1e-63 245.7 139 77.0
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 3.6e-63 245.0 135 76.3
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 3.6e-63 245.0 136 74.3
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 4.7e-63 244.6 133 76.7
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 6.2e-63 244.2 138 73.9
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 6.2e-63 244.2 130 77.7
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 6.2e-63 244.2 137 74.5
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 6.2e-63 244.2 136 73.5
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 6.2e-63 244.2 134 76.1
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 6.2e-63 244.2 137 75.2
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 6.2e-63 244.2 134 79.9
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 8.1e-63 243.8 135 77.0
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 8.1e-63 243.8 135 78.5
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.1e-62 243.4 134 78.4
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 1.1e-62 243.4 141 73.8
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.1e-62 243.4 137 75.9
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 1.4e-62 243.0 135 77.8
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 2.3e-62 242.3 136 73.5
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 2.3e-62 242.3 135 76.3
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 3.1e-62 241.9 135 77.8
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 3.1e-62 241.9 137 73.7
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.0e-62 241.5 137 73.7
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 8.9e-62 240.4 134 76.1
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.2e-61 240.0 136 75.7
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.5e-61 239.6 135 72.6
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.5e-61 239.6 130 79.2
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 3.4e-61 238.4 134 73.1
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 4.4e-61 238.0 135 74.1
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.8e-61 237.7 137 73.0
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 5.8e-61 237.7 134 76.1
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.8e-61 237.7 127 80.3
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 1.7e-60 236.1 141 71.6
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 2.2e-60 235.7 134 75.4
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 4.9e-60 234.6 136 72.1
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 6.4e-60 234.2 134 74.6
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.9e-59 232.6 140 72.1
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.9e-59 232.6 137 70.1
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 2.4e-59 232.3 137 71.5
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 3.2e-59 231.9 133 72.2
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.4e-59 231.1 137 70.8
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 2.7e-58 228.8 134 73.9
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 3.5e-58 228.4 136 72.8
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 3.5e-58 228.4 136 71.3
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 3.5e-58 228.4 135 71.1
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.6e-58 228.0 137 68.6
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 4.6e-58 228.0 131 73.3
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.0e-58 227.6 136 70.6
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 6.0e-58 227.6 126 77.8
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 6.0e-58 227.6 135 68.1
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.8e-58 227.3 137 68.6
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 3.9e-57 224.9 132 72.7
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 6.6e-57 224.2 133 72.9
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.9e-56 222.6 134 69.4
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.9e-56 222.6 120 81.7
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 1.9e-56 222.6 134 70.1
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 3.3e-56 221.9 134 70.9
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 4.3e-56 221.5 134 70.9
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.6e-56 221.1 131 74.0
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.2e-55 219.9 135 68.1
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 2.1e-55 219.2 121 78.5
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 2.8e-55 218.8 134 67.9
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 2.8e-55 218.8 135 68.9
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 3.6e-55 218.4 131 71.8
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.1e-54 216.9 134 68.7
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.1e-54 216.9 134 68.7
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.4e-54 216.5 134 67.9
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.8e-54 216.1 134 69.4
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.1e-54 215.3 121 73.6
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 3.1e-54 215.3 173 59.5
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 6.8e-54 214.2 137 67.9
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 6.8e-54 214.2 128 72.7
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 1.5e-53 213.0 133 68.4
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 2.0e-53 212.6 134 66.4
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 3.4e-53 211.8 134 65.7
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 5.8e-53 211.1 133 67.7
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 5.8e-53 211.1 131 70.2
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.3e-52 209.9 133 67.7
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.9e-52 208.8 133 66.9
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 6.4e-52 207.6 133 66.9
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 8.4e-52 207.2 121 71.9
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.1e-51 206.8 126 73.0
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 4.1e-51 204.9 119 72.3
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 4.1e-51 204.9 129 68.2
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 5.4e-51 204.5 121 73.6
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 7.1e-51 204.1 119 71.4
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 7.1e-51 204.1 119 71.4
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 1.7e-49 199.5 135 66.7
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 8.7e-49 197.2 133 64.7
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.1e-48 196.8 131 66.4
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.5e-48 196.4 140 61.4
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 7.3e-48 194.1 131 64.1
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.6e-47 191.8 132 62.1
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 3.1e-46 188.7 131 60.3
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.5e-45 186.4 137 62.8
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-45 186.4 137 56.9
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.4e-45 185.3 132 63.6
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 3.8e-44 181.8 106 73.6
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 4.9e-44 181.4 132 60.6
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 8.4e-44 180.6 99 77.8
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.2e-42 176.8 100 76.0
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.1e-42 176.0 132 59.1
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.9e-40 169.5 107 73.8
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.1e-38 163.7 126 61.9
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 9.0e-38 160.6 98 70.4
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.5e-37 159.8 125 58.4
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.4e-37 158.7 128 59.4
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.0e-33 147.1 86 73.3
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.3e-33 146.7 75 85.3
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 1.1e-32 143.7 141 46.8
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.7e-28 129.8 74 78.4
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.2e-28 129.4 72 72.2
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-24 116.7 112 50.0
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.9e-22 107.8 78 59.0
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.9e-22 107.8 63 71.4
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 3.2e-19 99.0 80 56.2


User provided reference genes

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