Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 8.9e-86 320.1 145 100.0
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.7e-84 315.8 145 98.6
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 5.0e-81 304.3 145 95.2
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.7e-79 297.7 145 91.7
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 6.4e-76 287.3 145 88.3
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.1e-75 286.6 145 88.3
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 3.9e-73 278.1 137 89.8
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 4.3e-72 274.6 137 89.1
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.7e-68 262.7 133 85.0
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 6.4e-68 260.8 135 80.7
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 8.3e-68 260.4 141 80.1
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 3.2e-67 258.5 138 80.4
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 7.0e-67 257.3 136 80.1
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 9.2e-67 256.9 136 80.9
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.6e-66 256.1 135 81.5
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 2.0e-66 255.8 133 82.7
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 2.7e-66 255.4 138 78.3
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 3.5e-66 255.0 136 80.1
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 7.8e-66 253.8 135 79.3
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.0e-65 253.4 137 78.1
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.0e-65 253.4 137 78.8
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.0e-65 253.4 137 79.6
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 1.3e-65 253.1 141 77.3
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 3.0e-65 251.9 135 80.0
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 3.9e-65 251.5 141 76.6
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 3.9e-65 251.5 141 76.6
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 5.0e-65 251.1 141 76.6
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 5.0e-65 251.1 136 77.2
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 5.0e-65 251.1 137 77.4
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 6.6e-65 250.8 133 82.0
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 6.6e-65 250.8 137 77.4
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 1.5e-64 249.6 138 77.5
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 2.5e-64 248.8 138 76.1
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 2.5e-64 248.8 135 78.5
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 4.3e-64 248.1 133 78.2
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 5.6e-64 247.7 129 84.5
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 5.6e-64 247.7 136 76.5
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 5.6e-64 247.7 135 78.5
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 5.6e-64 247.7 136 77.2
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 7.3e-64 247.3 133 81.2
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.3e-64 247.3 135 75.6
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 7.3e-64 247.3 136 77.9
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 9.5e-64 246.9 133 76.7
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 9.5e-64 246.9 145 76.6
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 9.5e-64 246.9 133 81.2
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 1.2e-63 246.5 136 74.3
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 1.6e-63 246.1 137 76.6
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 2.1e-63 245.7 141 74.5
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 2.8e-63 245.4 134 75.4
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 3.6e-63 245.0 136 75.0
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 3.6e-63 245.0 134 79.1
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.6e-63 245.0 137 75.9
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 4.7e-63 244.6 138 75.4
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 6.2e-63 244.2 141 75.2
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 8.1e-63 243.8 135 77.0
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 8.1e-63 243.8 127 81.1
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 2.3e-62 242.3 135 76.3
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.3e-62 242.3 127 80.3
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 3.1e-62 241.9 138 74.6
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 5.2e-62 241.1 136 75.0
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 6.8e-62 240.7 136 75.0
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 8.9e-62 240.4 130 76.2
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 8.9e-62 240.4 137 74.5
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 8.9e-62 240.4 138 73.9
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.2e-61 240.0 137 74.5
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 2.6e-61 238.8 132 75.8
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.6e-61 238.8 138 72.5
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 2.6e-61 238.8 133 76.7
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 3.4e-61 238.4 141 72.3
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 5.8e-61 237.7 133 76.7
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 7.5e-61 237.3 140 74.3
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.3e-60 236.5 137 71.5
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.3e-60 236.5 129 77.5
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 1.7e-60 236.1 131 76.3
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 3.7e-60 235.0 133 75.2
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 8.3e-60 233.8 135 71.1
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.2e-59 231.9 137 70.1
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.2e-59 231.9 136 72.1
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 4.1e-59 231.5 126 77.8
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.4e-59 231.1 137 70.1
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 7.1e-59 230.7 133 71.4
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 9.2e-59 230.3 136 73.5
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 9.2e-59 230.3 141 70.9
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.2e-58 229.9 135 74.1
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.1e-58 229.2 136 72.1
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 6.0e-58 227.6 133 74.4
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 7.8e-58 227.3 131 74.8
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.3e-57 226.5 133 71.4
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 2.3e-57 225.7 121 80.2
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 3.0e-57 225.3 132 73.5
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.5e-56 223.0 135 69.6
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.5e-56 223.0 119 82.4
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 1.9e-56 222.6 133 71.4
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 2.5e-56 222.2 133 71.4
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 3.3e-56 221.9 131 71.8
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.3e-56 221.5 121 75.2
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 5.6e-56 221.1 125 76.0
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 7.3e-56 220.7 133 69.2
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 1.6e-55 219.5 133 68.4
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 2.1e-55 219.2 134 70.1
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 2.1e-55 219.2 133 69.9
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 2.1e-55 219.2 133 69.9
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 6.2e-55 217.6 133 70.7
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 8.1e-55 217.2 134 69.4
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 8.1e-55 217.2 133 68.4
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.8e-54 216.1 180 57.8
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 4.0e-54 214.9 125 72.0
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 5.2e-54 214.5 133 66.9
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 8.9e-54 213.8 134 68.7
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.2e-53 213.4 121 73.6
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.2e-53 213.4 135 65.9
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 1.5e-53 213.0 134 66.4
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 7.6e-53 210.7 126 72.2
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 1.3e-52 209.9 136 64.7
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 1.3e-52 209.9 121 74.4
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 1.7e-52 209.5 130 70.0
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.9e-52 208.8 125 68.0
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.9e-51 206.1 132 65.2
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 2.4e-51 205.7 128 68.8
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.1e-51 204.9 132 64.4
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 4.1e-51 204.9 129 66.7
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 4.6e-50 201.4 143 60.8
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 2.3e-49 199.1 130 66.9
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 1.1e-48 196.8 133 66.9
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 4.3e-48 194.9 130 66.2
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 5.6e-48 194.5 135 60.7
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.8e-47 192.2 137 59.1
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.4e-46 189.9 137 62.0
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.4e-46 189.9 132 62.1
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 1.2e-45 186.8 129 62.0
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 1.3e-44 183.3 106 72.6
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.7e-44 183.0 137 62.8
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.4e-43 179.1 132 60.6
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 4.2e-43 178.3 99 77.8
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 4.2e-43 178.3 100 75.0
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 6.0e-42 174.5 132 59.1
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 4.3e-40 168.3 107 74.8
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 6.2e-39 164.5 126 58.7
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.5e-37 159.8 118 59.3
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 1.5e-37 159.8 98 72.4
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.6e-37 159.1 124 58.1
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.6e-34 149.8 86 73.3
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 3.3e-32 142.1 145 45.5
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 5.6e-32 141.4 82 75.6
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.4e-29 132.1 72 76.4
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 5.8e-29 131.3 74 79.7
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-25 119.8 112 51.8
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-22 109.8 63 73.0
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.4e-22 109.4 78 60.3
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 2.5e-19 99.4 80 56.2


User provided reference genes

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