Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1466.1 743 100.0
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1434.9 743 98.0
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1327.8 749 88.9
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1327.0 746 90.3
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1309.7 747 86.6
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1298.9 747 85.8
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1298.5 751 86.6
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1293.1 751 87.1
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1290.4 755 85.7
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1290.4 747 86.5
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1289.6 748 86.0
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1289.2 753 86.9
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1286.6 743 86.0
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1286.6 752 85.0
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1286.2 747 84.9
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1284.2 752 84.8
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1283.1 748 85.2
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1283.1 745 85.4
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1281.9 743 85.9
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1279.2 745 85.2
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1278.5 743 85.2
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1278.5 743 85.3
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1276.5 753 86.1
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1273.1 749 84.0
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1271.9 748 83.7
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1271.5 746 84.9
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1270.4 713 87.5
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1270.4 751 84.3
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1268.8 751 84.3
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1268.4 747 84.7
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1268.4 749 84.1
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1266.9 752 84.4
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1266.5 749 86.1
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1264.6 743 83.8
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1264.2 744 84.7
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1264.2 749 86.2
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1261.5 749 85.7
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1261.5 748 82.9
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1260.4 750 85.3
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1260.4 749 84.5
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 746 83.2
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 746 83.8
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1258.8 742 83.4
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1258.4 745 83.6
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1258.0 748 82.9
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1257.7 749 83.2
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1257.3 749 85.4
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1257.3 743 83.4
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1257.3 778 81.2
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1255.4 748 86.1
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1254.6 744 83.9
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1252.3 749 82.6
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1252.3 745 83.2
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 750 83.3
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1247.3 689 88.0
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1247.3 747 83.1
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1246.9 757 83.1
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1246.1 743 82.4
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1245.7 744 83.3
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1245.7 748 83.4
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1245.7 757 83.5
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1243.4 801 78.7
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1241.9 751 81.6
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1241.5 745 82.8
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1239.9 748 81.3
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1239.2 747 83.7
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1237.6 748 81.8
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 746 82.0
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1227.6 845 75.0
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1226.5 747 81.7
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1221.8 743 82.0
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1221.5 747 81.5
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1218.0 748 80.7
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1217.6 748 80.7
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 748 80.6
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1216.1 748 80.5
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1215.7 749 80.9
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1215.3 749 82.2
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1214.1 747 80.1
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 746 80.4
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1213.4 748 80.1
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1212.2 690 85.7
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1211.8 748 80.3
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1211.8 748 80.3
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1211.8 749 82.5
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1210.3 748 80.5
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1209.9 748 81.6
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1209.1 746 80.3
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1208.4 738 82.2
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1208.4 746 80.7
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1206.8 747 80.3
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1206.0 748 80.5
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1203.3 747 79.3
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1201.0 691 84.8
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1200.7 744 81.3
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1199.1 753 79.5
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1198.0 691 84.5
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 751 79.8
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1194.9 748 80.3
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1191.0 780 76.4
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1190.3 691 83.9
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1185.6 658 87.5
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1185.2 748 79.4
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1182.2 690 82.8
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1173.7 690 83.3
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1171.0 658 87.4
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1171.0 658 87.5
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1153.3 658 88.3
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1145.6 747 78.3
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1145.6 746 76.7
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1141.7 743 76.7
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1138.6 663 84.8
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1133.6 721 77.7
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1120.5 748 76.6
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1115.1 1026 59.6
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1107.0 690 78.8
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 6.1e-311 1070.5 622 85.9
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 2.9e-310 1068.1 752 74.3
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 4.6e-287 991.1 677 69.7
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 1.0e-286 989.9 678 70.6
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.4e-280 969.5 688 69.0
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.4e-280 969.5 677 69.9
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.4e-280 969.5 677 69.9
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 3.2e-280 968.4 686 69.1
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 9.2e-280 966.8 677 69.7
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 7.1e-264 914.1 593 77.9
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 3.6e-260 901.7 593 77.4
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 1.4e-251 873.2 679 62.2
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 8.8e-230 800.8 686 58.0
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 1.9e-224 783.1 686 58.2
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 1.8e-214 750.0 675 56.9
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 6.3e-212 741.5 671 62.3
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 1.1e-192 677.6 676 51.9
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 9.8e-173 611.3 704 46.9
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 5.1e-169 599.0 361 80.6
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 6.2e-159 565.5 305 89.5
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 9.9e-157 558.1 320 87.2
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 1.4e-142 511.1 302 88.7
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 1.8e-134 484.2 301 82.1
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.1e-131 474.9 309 75.4
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.2e-122 444.9 294 74.8
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 8.2e-111 405.6 236 83.1
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 9.1e-102 375.6 241 78.8
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 7.7e-101 372.5 298 66.8
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 1.5e-99 368.2 219 84.9
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.2e-98 365.2 298 65.4
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 6.8e-89 332.8 220 75.9
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 8.6e-76 289.3 172 80.2
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 3.0e-68 264.2 366 40.2
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 2.1e-66 258.1 126 97.6
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.4e-62 245.4 144 81.9
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 2.4e-62 244.6 260 55.0
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 6.0e-61 240.0 402 42.8
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 2.5e-59 234.6 114 97.4
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 4.6e-45 187.2 117 77.8
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 3.0e-44 184.5 140 69.3
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.5e-40 172.2 144 62.5
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 2.0e-40 171.8 102 74.5
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.2e-37 162.5 122 69.7
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 5.1e-36 157.1 85 83.5
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 3.1e-33 147.9 142 52.1
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 1.2e-29 136.0 83 79.5
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 5.1e-28 130.6 113 64.6
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.1e-27 129.4 105 61.9
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 2.5e-27 128.3 136 54.4
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 8.1e-26 123.2 61 90.2
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 4.0e-25 120.9 99 66.7
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 3.8e-23 114.4 220 30.9
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 4.8e-18 97.4 139 46.8
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 2.2e-15 88.6 50 78.0
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 1.1e-14 86.3 56 76.8
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 1.9e-11 75.5 42 88.1
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 3.7e-10 71.2 38 89.5
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 5.5e-06 57.4 32 78.1


User provided reference genes

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