Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 1.4e-104 382.9 188 100.0
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 9.3e-104 380.2 188 99.5
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 2.5e-101 372.1 188 96.3
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 6.9e-99 364.0 188 93.1
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 5.9e-98 360.9 188 92.0
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.3e-97 359.8 188 92.0
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 1.7e-97 359.4 188 91.5
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 2.2e-97 359.0 188 92.6
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 5.0e-97 357.8 188 91.5
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 6.5e-97 357.5 193 90.2
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 6.5e-97 357.5 187 91.4
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 8.5e-97 357.1 188 91.5
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 1.4e-96 356.3 188 91.0
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 1.4e-96 356.3 188 91.0
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 4.2e-96 354.8 189 91.0
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 4.2e-96 354.8 188 90.4
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 4.2e-96 354.8 188 90.4
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 5.5e-96 354.4 188 91.0
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 7.2e-96 354.0 189 91.0
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 9.4e-96 353.6 189 90.5
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 2.1e-95 352.4 189 88.9
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 2.7e-95 352.1 189 88.4
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 2.7e-95 352.1 187 89.8
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 4.6e-95 351.3 189 90.5
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 6.1e-95 350.9 188 88.8
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 6.1e-95 350.9 191 90.1
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 6.1e-95 350.9 189 89.4
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 1.4e-94 349.7 192 90.6
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 1.8e-94 349.4 191 89.5
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 1.8e-94 349.4 188 89.4
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 2.3e-94 349.0 189 88.4
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 3.0e-94 348.6 191 90.6
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 5.1e-94 347.8 189 88.9
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 6.7e-94 347.4 189 89.4
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 6.7e-94 347.4 191 87.4
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 8.8e-94 347.1 193 87.0
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 8.8e-94 347.1 189 87.3
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 8.8e-94 347.1 189 88.4
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 8.8e-94 347.1 189 88.9
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 1.1e-93 346.7 190 88.4
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 1.1e-93 346.7 189 88.9
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 1.5e-93 346.3 188 88.3
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 4.4e-93 344.7 189 90.5
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 5.7e-93 344.4 191 86.9
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 5.7e-93 344.4 191 87.4
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 5.7e-93 344.4 189 86.8
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 1.3e-92 343.2 189 87.3
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 1.3e-92 343.2 189 87.3
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 1.7e-92 342.8 187 88.2
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 2.2e-92 342.4 191 85.3
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 2.8e-92 342.0 187 88.2
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 3.7e-92 341.7 192 87.5
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 4.8e-92 341.3 189 87.3
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 1.4e-91 339.7 192 87.5
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 1.4e-91 339.7 190 87.9
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 1.8e-91 339.3 191 88.0
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 1.8e-91 339.3 189 86.2
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 2.4e-91 339.0 189 86.2
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 2.4e-91 339.0 192 88.0
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 3.1e-91 338.6 189 86.8
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 3.1e-91 338.6 191 88.0
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 4.1e-91 338.2 189 86.2
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 5.3e-91 337.8 193 85.5
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 5.3e-91 337.8 189 85.2
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 5.3e-91 337.8 189 84.7
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 2.0e-90 335.9 192 86.5
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 2.6e-90 335.5 189 85.2
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 5.9e-90 334.3 189 84.7
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 7.7e-90 334.0 190 83.7
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 2.2e-89 332.4 192 83.9
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 2.9e-89 332.0 190 81.6
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 2.9e-89 332.0 189 84.7
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 5.0e-89 331.3 189 84.7
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 5.0e-89 331.3 189 83.6
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 5.0e-89 331.3 191 85.9
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 6.5e-89 330.9 186 84.9
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 8.5e-89 330.5 191 85.3
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 1.9e-88 329.3 189 83.1
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 4.2e-88 328.2 191 85.3
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 4.2e-88 328.2 189 83.1
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 5.5e-88 327.8 184 85.3
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 7.2e-88 327.4 191 84.8
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 9.4e-88 327.0 190 81.1
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 9.4e-88 327.0 188 84.6
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 1.6e-87 326.2 191 84.3
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 1.6e-87 326.2 191 84.3
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 1.6e-87 326.2 188 87.2
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 2.1e-87 325.9 191 83.2
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 2.7e-87 325.5 191 83.2
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 3.6e-87 325.1 191 83.8
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 3.6e-87 325.1 191 83.8
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 3.6e-87 325.1 194 81.4
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 3.6e-87 325.1 192 81.8
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 4.7e-87 324.7 191 83.8
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 4.7e-87 324.7 191 83.8
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 6.1e-87 324.3 191 83.8
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 1.0e-86 323.6 191 82.2
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 1.4e-86 323.2 191 82.7
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 1.4e-86 323.2 189 83.1
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 3.9e-86 321.6 191 83.2
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 1.1e-85 320.1 178 87.1
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 1.5e-85 319.7 191 83.2
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 3.3e-85 318.5 188 81.4
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 3.7e-84 315.1 189 78.8
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 6.3e-84 314.3 188 79.3
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 3.1e-83 312.0 188 78.7
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 3.2e-72 275.4 181 76.8
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 1.8e-70 269.6 156 82.1
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 2.3e-70 269.2 145 90.3
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 3.4e-69 265.4 186 65.6
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 4.4e-69 265.0 191 68.6
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 3.7e-68 261.9 158 82.3
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.8e-67 259.6 190 66.3
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 2.0e-66 256.1 189 65.6
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 5.0e-65 251.5 147 83.7
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.2e-63 246.9 190 64.2
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.7e-57 226.5 183 57.9
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 3.8e-57 225.3 149 74.5
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 5.0e-57 224.9 183 57.4
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 1.8e-54 216.5 187 52.9
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 5.9e-50 201.4 185 52.4
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 1.3e-49 200.3 185 55.1
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.7e-49 199.9 182 60.4
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 2.8e-47 192.6 181 53.0
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 6.4e-44 181.4 186 53.2
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 6.4e-44 181.4 188 53.2
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 2.6e-37 159.5 94 85.1
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 2.2e-36 156.4 91 82.4
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 7.6e-29 131.3 79 79.7
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 4.6e-26 122.1 183 37.2
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 1.1e-24 117.5 182 35.2
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 4.4e-21 105.5 50 94.0
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 1.9e-11 73.6 154 31.8
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 6.7e-09 65.1 31 93.5
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 1.3e-07 60.8 28 92.9


User provided reference genes

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