Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 4.3e-95 351.3 174 100.0
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 3.1e-77 292.0 179 81.0
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.5e-68 263.1 201 66.2
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.9e-64 248.4 178 70.2
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 1.1e-63 246.9 176 71.0
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 1.9e-63 246.1 176 70.5
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 2.5e-63 245.7 176 70.5
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 6.3e-62 241.1 179 67.6
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 3.1e-61 238.8 178 69.7
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 6.1e-57 224.6 175 62.3
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 1.4e-53 213.4 173 64.7
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.8e-53 213.0 171 63.7
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 3.1e-53 212.2 105 98.1
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 1.5e-52 209.9 174 62.6
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 4.5e-52 208.4 178 63.5
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 5.9e-52 208.0 174 62.6
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 5.9e-52 208.0 177 64.4
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.0e-51 207.2 174 61.5
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 2.2e-51 206.1 151 64.2
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 3.8e-51 205.3 174 62.1
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 8.5e-51 204.1 174 59.8
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 1.1e-50 203.8 179 57.5
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 1.9e-50 203.0 174 61.5
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.9e-50 203.0 174 59.2
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 5.5e-50 201.4 176 60.2
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 1.2e-49 200.3 174 62.1
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 1.6e-49 199.9 174 59.8
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 1.6e-49 199.9 178 59.6
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 3.6e-49 198.7 133 75.9
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 4.7e-49 198.4 174 58.6
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 4.7e-49 198.4 179 54.2
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 6.1e-49 198.0 174 61.5
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 8.0e-49 197.6 175 61.7
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 1.0e-48 197.2 174 58.0
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 1.0e-48 197.2 174 59.2
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 1.4e-48 196.8 174 60.3
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.4e-48 196.8 177 60.5
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 1.4e-48 196.8 174 59.2
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 3.0e-48 195.7 174 58.6
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 3.0e-48 195.7 178 59.6
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 6.7e-48 194.5 178 57.3
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 6.7e-48 194.5 247 47.8
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 8.8e-48 194.1 174 54.6
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 1.1e-47 193.7 178 57.3
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 1.1e-47 193.7 174 59.8
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 3.3e-47 192.2 174 58.6
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 3.3e-47 192.2 174 58.6
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 4.4e-47 191.8 174 58.6
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 7.4e-47 191.0 174 58.0
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 1.3e-46 190.3 174 58.6
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 1.7e-46 189.9 174 56.3
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 2.2e-46 189.5 174 57.5
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.2e-46 189.5 174 57.5
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 2.2e-46 189.5 174 58.6
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 3.7e-46 188.7 174 58.0
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 1.1e-45 187.2 176 56.8
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 1.1e-45 187.2 174 55.2
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 1.1e-45 187.2 174 55.7
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 1.8e-45 186.4 176 56.8
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 1.8e-45 186.4 174 56.9
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.4e-45 186.0 174 56.9
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 3.1e-45 185.7 178 54.5
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 5.3e-45 184.9 178 55.6
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 1.2e-44 183.7 174 57.5
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.6e-44 183.3 174 55.7
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 1.6e-44 183.3 174 55.7
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 2.0e-44 183.0 179 55.3
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.0e-44 183.0 176 56.8
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 3.5e-44 182.2 174 56.3
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 3.5e-44 182.2 173 57.2
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 4.5e-44 181.8 174 54.6
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 4.5e-44 181.8 179 55.9
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 5.9e-44 181.4 179 55.9
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 1.7e-43 179.9 179 55.3
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 1.7e-43 179.9 174 55.2
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 2.2e-43 179.5 174 55.2
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.2e-43 179.5 174 55.2
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 8.5e-43 177.6 174 55.2
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 8.5e-43 177.6 174 54.6
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 1.9e-42 176.4 174 54.0
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 3.2e-42 175.6 175 54.9
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 7.2e-42 174.5 174 53.4
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.2e-41 173.7 174 53.4
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 1.6e-41 173.3 174 53.4
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 1.6e-41 173.3 101 80.2
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.1e-41 172.9 177 53.1
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 2.7e-41 172.6 174 54.0
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 3.6e-41 172.2 174 54.6
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 4.7e-41 171.8 174 52.3
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 6.1e-41 171.4 176 50.6
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 1.8e-40 169.9 174 51.7
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 6.7e-40 167.9 174 52.9
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 5.7e-39 164.9 160 56.9
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 7.5e-39 164.5 210 45.7
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 2.8e-38 162.5 174 50.6
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 1.8e-37 159.8 173 50.3
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 5.3e-37 158.3 159 56.0
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 5.3e-37 158.3 203 45.8
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 1.2e-36 157.1 174 50.0
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 1.6e-36 156.8 98 77.6
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 7.7e-36 154.5 137 55.5
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 5.0e-35 151.8 138 58.0
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 5.0e-35 151.8 174 46.6
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.5e-34 149.4 103 70.9
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 1.6e-33 146.7 195 45.6
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.2e-31 140.6 127 59.1
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 3.4e-31 139.0 145 51.7
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 6.3e-30 134.8 138 50.7
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 1.4e-29 133.7 181 44.2
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 2.4e-29 132.9 214 42.1
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 3.1e-29 132.5 174 43.7
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 5.9e-28 128.3 101 61.4
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 5.9e-28 128.3 138 50.7
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.5e-26 121.7 140 49.3
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.2e-25 120.6 84 67.9
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.6e-25 120.2 88 68.2
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 1.0e-24 117.5 167 41.9
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.5e-23 113.6 176 39.8
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 2.0e-23 113.2 89 61.8
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 7.5e-23 111.3 89 60.7
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.1e-21 107.5 89 60.7
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 2.5e-10 69.7 36 88.9
Haze_10727 Corylus avellana HOM05D006436 ORTHO05D008011 3.1e-08 62.8 38 78.9
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 8.9e-08 61.2 36 75.0
SEGI_00674 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 1.2e-07 60.8 53 50.9
RcHm_v2.0_Chr4g0394581 Rosa chinensis HOM05D004344 ORTHO05D006026 2.0e-07 60.1 51 58.8
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 2.6e-07 59.7 36 77.8
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 7.5e-07 58.2 36 69.4


User provided reference genes

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