Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 2.0e-200 702.2 350 100.0
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 1.8e-196 689.1 350 97.1
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 8.8e-164 580.5 360 77.8
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 2.4e-153 545.8 365 69.6
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 5.3e-153 544.7 365 69.9
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 1.3e-151 540.0 365 70.1
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 2.2e-151 539.3 365 69.3
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 4.7e-149 531.6 351 75.5
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 5.7e-147 524.6 370 71.1
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 1.1e-145 520.4 359 70.5
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 7.0e-145 517.7 373 67.6
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 2.7e-144 515.8 359 70.5
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 4.5e-144 515.0 367 68.7
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 1.7e-143 513.1 370 68.1
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 6.5e-143 511.1 365 67.9
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 8.5e-143 510.8 364 68.7
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 1.1e-142 510.4 365 68.8
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 2.5e-142 509.2 364 68.7
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.6e-141 506.5 368 67.1
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 4.7e-141 505.0 368 67.1
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 3.0e-140 502.3 361 70.1
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 3.4e-139 498.8 372 64.8
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 4.4e-139 498.4 370 66.2
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 5.7e-139 498.0 370 67.6
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 1.3e-138 496.9 368 67.1
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 1.7e-138 496.5 361 68.4
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 3.7e-138 495.4 368 66.3
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 4.8e-138 495.0 364 66.5
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 1.4e-137 493.4 372 67.2
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 2.4e-137 492.7 369 64.2
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 3.1e-137 492.3 371 66.6
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 4.1e-137 491.9 369 66.4
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.6e-136 490.0 363 68.3
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 2.0e-136 489.6 369 65.3
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 3.5e-136 488.8 363 68.0
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 7.7e-136 487.6 363 67.8
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 7.7e-136 487.6 375 66.4
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.0e-135 487.3 363 68.0
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.0e-135 487.3 363 68.0
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 6.5e-135 484.6 363 65.6
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.6e-133 479.9 373 62.5
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.6e-133 479.9 356 66.9
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.8e-133 479.2 373 62.2
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 1.8e-132 476.5 377 63.9
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.0e-132 475.7 363 66.7
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.0e-131 473.0 373 61.7
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 4.4e-131 471.9 364 64.0
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 7.5e-131 471.1 370 61.4
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 1.3e-130 470.3 377 61.3
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 1.3e-130 470.3 371 62.8
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 2.8e-130 469.2 370 61.4
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 6.3e-130 468.0 373 62.5
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 2.4e-129 466.1 371 62.3
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 3.5e-128 462.2 362 61.6
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 7.8e-128 461.1 350 66.3
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 6.6e-127 458.0 383 60.1
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 1.1e-126 457.2 371 62.0
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 9.5e-126 454.1 371 62.0
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 2.1e-125 453.0 371 60.1
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 2.8e-125 452.6 372 61.0
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 3.6e-125 452.2 372 61.3
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.0e-124 450.7 372 61.0
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.8e-124 448.0 374 60.2
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.4e-123 445.7 373 61.7
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.4e-123 445.7 373 61.4
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.4e-123 445.7 351 66.4
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 5.8e-123 444.9 366 63.1
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.8e-123 444.9 374 59.6
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 7.5e-123 444.5 374 59.9
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 3.7e-122 442.2 360 60.8
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 4.9e-122 441.8 372 59.9
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 6.4e-122 441.4 367 60.2
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 6.4e-122 441.4 367 60.2
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 6.4e-122 441.4 368 62.2
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 8.3e-122 441.0 367 60.2
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 1.1e-121 440.7 372 60.5
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 1.4e-121 440.3 366 61.7
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 3.2e-121 439.1 368 59.5
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 3.2e-121 439.1 362 61.6
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 9.2e-121 437.6 366 62.0
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.6e-120 436.8 366 62.0
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 2.0e-120 436.4 361 62.9
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 4.6e-120 435.3 361 62.6
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.3e-119 433.7 371 58.5
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 3.9e-119 432.2 350 62.0
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 5.0e-119 431.8 374 59.6
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 1.1e-118 430.6 361 62.3
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 1.1e-118 430.6 374 59.9
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 2.8e-117 426.0 368 59.8
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 6.2e-117 424.9 366 60.1
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 1.1e-116 424.1 381 57.7
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.8e-116 423.3 362 59.1
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 2.6e-115 419.5 361 59.6
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.7e-114 416.8 365 58.9
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 7.0e-113 411.4 353 60.6
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.6e-112 410.2 359 58.8
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.1e-112 409.8 372 55.1
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 3.3e-110 402.5 344 59.3
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.6e-110 401.7 359 55.2
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 9.5e-110 401.0 353 56.4
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 6.2e-109 398.3 380 54.2
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.9e-107 391.0 353 56.1
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 4.4e-99 365.5 458 45.6
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.2e-98 363.2 336 57.1
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.2e-98 363.2 336 57.1
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 1.7e-95 353.6 366 51.6
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 5.6e-94 348.6 368 51.4
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 4.0e-92 342.4 365 51.0
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 7.3e-86 321.6 290 54.5
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.6e-85 320.5 360 46.1
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 6.9e-84 315.1 286 56.3
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 4.9e-82 308.9 375 46.4
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 9.3e-81 304.7 352 47.7
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 1.1e-76 291.2 327 47.4
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 3.5e-72 276.2 338 45.6
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 1.1e-65 254.6 376 40.7
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 1.2e-64 251.1 361 39.6
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 1.8e-63 247.3 199 60.8
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 6.3e-61 238.8 229 59.0
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 2.6e-59 233.4 182 60.4
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 1.5e-54 217.6 201 49.8
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.5e-49 200.3 275 38.9
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 7.9e-48 195.3 173 56.6
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.0e-46 190.7 304 37.2
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 1.3e-42 177.9 163 54.0
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 2.5e-41 173.7 131 63.4
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.2e-41 173.3 131 63.4
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 4.7e-40 169.5 146 56.2
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.3e-36 156.0 131 60.3
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 9.1e-36 155.2 283 30.7
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 1.8e-31 141.0 220 43.2
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 8.3e-29 132.1 92 64.1
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 2.4e-28 130.6 105 60.0
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 4.1e-28 129.8 92 63.0
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 3.5e-27 126.7 112 55.4
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.5e-27 126.3 92 60.9
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.5e-27 126.3 92 60.9
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 1.1e-25 121.7 286 29.0
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.2e-25 120.2 97 58.8
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 3.1e-20 103.6 85 67.1
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.2e-16 91.7 70 58.6
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 3.6e-16 90.1 65 63.1
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 3.6e-16 90.1 65 63.1
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 3.7e-13 80.1 58 70.7
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 4.9e-13 79.7 45 86.7
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 7.0e-12 75.9 77 51.9
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 1.2e-11 75.1 103 47.6
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.5e-11 73.2 65 55.4
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.3e-10 71.6 59 57.6
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 2.5e-09 67.4 76 48.7


User provided reference genes

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