Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007683 Carpinus fangiana HOM05D000343 ORTHO05D021090 1.7e-54 215.7 107 100.0
Cfa000665 Carpinus fangiana HOM05D000343 ORTHO05D000975 2.9e-33 145.2 76 97.4
Haze_06155 Corylus avellana HOM05D000343 ORTHO05D000975 4.9e-33 144.4 76 94.7
Cfa008594 Carpinus fangiana HOM05D000343 ORTHO05D021090 1.1e-32 143.3 76 97.4
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.4e-32 142.1 76 94.7
CiPaw.09G073800 Carya illinoinensis HOM05D000343 ORTHO05D000975 4.5e-26 121.3 80 76.2
QL11p012985 Quercus lobata HOM05D000343 ORTHO05D000975 1.6e-23 112.8 76 76.3
CiPaw.10G062500 Carya illinoinensis HOM05D000343 ORTHO05D000975 1.8e-22 109.4 80 76.2
Dinv31173 Davidia involucrata HOM05D000343 ORTHO05D000975 2.5e-21 105.5 81 69.1
vmacro11008 Vaccinium macrocarpon HOM05D000343 ORTHO05D000975 3.3e-21 105.1 115 57.4
Cpa.g.sc30.132 Carica papaya HOM05D000343 ORTHO05D000975 9.6e-21 103.6 82 65.9
Hma1.2p1_0088F.1_g045010 Hydrangea macrophylla HOM05D000343 ORTHO05D000975 6.2e-20 100.9 79 67.1
Actinidia31364 Actinidia chinensis HOM05D000343 ORTHO05D021090 4.0e-19 98.2 79 65.8
Rhsim02G0169300 Rhododendron simsii HOM05D000343 ORTHO05D000975 6.9e-19 97.4 82 63.4
TWI15G0682 Tripterygium wilfordii HOM05D000343 ORTHO05D000975 9.0e-19 97.1 81 65.4
PGR004G2704 Punica granatum HOM05D000343 ORTHO05D000975 1.2e-18 96.7 80 63.8
Thecc.02G005600 Theobroma cacao HOM05D000343 ORTHO05D000975 1.5e-18 96.3 82 63.4
TAR626G0885 Trochodendron aralioides HOM05D000343 ORTHO05D000975 2.0e-18 95.9 84 64.3
ClCG01G025580 Citrullus lanatus HOM05D000343 ORTHO05D000975 2.6e-18 95.5 85 63.5
RcHm_v2.0_Chr5g0020701 Rosa chinensis HOM05D000343 ORTHO05D000975 2.6e-18 95.5 81 66.7
MELO3C007027.2 Cucumis melo HOM05D000343 ORTHO05D000975 4.5e-18 94.7 85 63.5
Atru.chr10.410 Acer truncatum HOM05D000343 ORTHO05D000975 5.8e-18 94.4 78 66.7
Manes.03G074800 Manihot esculenta HOM05D000343 ORTHO05D000975 7.6e-18 94.0 93 58.1
Nn7g38284 Nelumbo nucifera HOM05D000343 ORTHO05D000975 7.6e-18 94.0 84 61.9
Carub.0008s0346 Capsella rubella HOM05D000343 ORTHO05D000975 9.9e-18 93.6 81 64.2
CsaV3_6G052820 Cucumis sativus L. HOM05D000343 ORTHO05D000975 1.7e-17 92.8 85 62.4
CSS0014840 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D000975 2.2e-17 92.4 84 59.5
Ca_18246_v3 Cicer arietinum L. HOM05D000343 ORTHO05D000975 2.2e-17 92.4 76 67.1
Duzib248G0157 Durio zibethinus HOM05D000343 ORTHO05D000975 2.9e-17 92.0 86 59.3
TPR.G31241 Trifolium pratense HOM05D000343 ORTHO05D000975 2.9e-17 92.0 76 69.7
FAN21G3394 Fragaria x ananassa HOM05D000343 ORTHO05D000975 3.8e-17 91.7 77 70.1
CANSAT35G0769 Cannabis sativa HOM05D000343 ORTHO05D000975 4.9e-17 91.3 80 61.2
MD05G1247900 Malus domestica HOM05D000343 ORTHO05D000975 4.9e-17 91.3 81 63.0
Manes.16G060400 Manihot esculenta HOM05D000343 ORTHO05D000975 1.1e-16 90.1 93 53.8
COL.COLO4_17630 Corchorus olitorius HOM05D000343 ORTHO05D000975 1.4e-16 89.7 87 57.5
arahy.Tifrunner.gnm1.ann1.8Q2P9V Arachis hypogaea HOM05D000343 ORTHO05D000975 1.9e-16 89.4 77 64.9
arahy.Tifrunner.gnm1.ann1.GR9FC3 Arachis hypogaea HOM05D000343 ORTHO05D000975 1.9e-16 89.4 77 64.9
arahy.Tifrunner.gnm1.ann1.XIB6CP Arachis hypogaea HOM05D000343 ORTHO05D000975 1.9e-16 89.4 77 64.9
Lsat_1_v5_gn_5_47401 Lactuca sativa HOM05D000343 ORTHO05D000975 1.9e-16 89.4 89 57.3
Lj2C343G15 Lonicera japonica HOM05D000343 ORTHO05D000975 1.9e-16 89.4 82 59.8
Sed0022590 Sechium edule HOM05D000343 ORTHO05D000975 1.9e-16 89.4 83 60.2
CARHR178080 Cardamine hirsuta HOM05D000343 ORTHO05D000975 2.4e-16 89.0 87 55.2
Thhalv10000758m.g Eutrema salsugineum HOM05D000343 ORTHO05D000975 2.4e-16 89.0 90 57.8
PSO675G5234 Papaver somniferum HOM05D000343 ORTHO05D000975 2.4e-16 89.0 89 58.4
TAR624G1262 Trochodendron aralioides HOM05D000343 ORTHO05D000975 2.4e-16 89.0 83 62.7
Duzib132G0104 Durio zibethinus HOM05D000343 ORTHO05D000975 3.2e-16 88.6 86 59.3
Sp2g09640 Schrenkiella parvula HOM05D000343 ORTHO05D000975 3.2e-16 88.6 86 57.0
TWI38G1614 Tripterygium wilfordii HOM05D000343 ORTHO05D000975 3.2e-16 88.6 82 63.4
Sed0017485 Sechium edule HOM05D000343 ORTHO05D000975 4.2e-16 88.2 86 61.6
MD10G1228800 Malus domestica HOM05D000343 ORTHO05D000975 5.5e-16 87.8 81 63.0
Prupe.4G115900 Prunus persica HOM05D000343 ORTHO05D000975 5.5e-16 87.8 83 61.4
Aqoxy1G01417 Aquilegia oxysepala HOM05D000343 ORTHO05D000975 7.1e-16 87.4 82 58.5
FAN25G2128 Fragaria x ananassa HOM05D000343 ORTHO05D000975 7.1e-16 87.4 77 66.2
THA.LOC104811764 Tarenaya hassleriana HOM05D000343 ORTHO05D000975 9.3e-16 87.0 92 55.4
PSO541G2797 Papaver somniferum HOM05D000343 ORTHO05D000975 1.2e-15 86.7 93 55.9
ECA246G1037 Erigeron canadensis HOM05D000343 ORTHO05D000975 2.1e-15 85.9 73 60.3
Glyma.09G052000 Glycine max HOM05D000343 ORTHO05D000975 2.1e-15 85.9 76 60.5
Lalb_Chr15g0083811 Lupinus albus HOM05D000343 ORTHO05D000975 2.1e-15 85.9 74 62.2
arahy.Tifrunner.gnm1.ann1.H8X8VQ Arachis hypogaea HOM05D000343 ORTHO05D000975 2.7e-15 85.5 79 57.0
Nitab4.5_0000443g0130 Nicotiana tabacum HOM05D000343 ORTHO05D000975 2.7e-15 85.5 76 61.8
AL8G14730 Arabidopsis lyrata HOM05D000343 ORTHO05D000975 3.5e-15 85.1 87 57.5
DCAR_001287 Daucus carota HOM05D000343 ORTHO05D000975 3.5e-15 85.1 72 63.9
DCAR_031378 Daucus carota HOM05D000343 ORTHO05D021090 3.5e-15 85.1 72 63.9
Eucgr.D00027 Eucalyptus grandis HOM05D000343 ORTHO05D000975 3.5e-15 85.1 89 58.4
HanXRQChr12g0378131 Helianthus annuus HOM05D000343 ORTHO05D000975 4.6e-15 84.7 79 58.2
BcaC06g31586 Brassica carinata HOM05D000343 ORTHO05D000975 6.0e-15 84.3 82 59.8
BcaC06g34504 Brassica carinata HOM05D000343 ORTHO05D000975 7.9e-15 84.0 84 57.1
arahy.Tifrunner.gnm1.ann1.PPR7D4 Arachis hypogaea HOM05D000343 ORTHO05D000975 1.0e-14 83.6 79 55.7
A06p46880 Brassica napus HOM05D000343 ORTHO05D000975 1.0e-14 83.6 84 58.3
BraA06t27561Z Brassica rapa HOM05D000343 ORTHO05D000975 1.0e-14 83.6 84 58.3
Aa31LG6G2420 Aethionema arabicum HOM05D000343 ORTHO05D000975 1.3e-14 83.2 88 55.7
Nitab4.5_0007772g0010 Nicotiana tabacum HOM05D000343 ORTHO05D000975 1.3e-14 83.2 76 59.2
Phvul.009G241800 Phaseolus vulgaris HOM05D000343 ORTHO05D000975 1.3e-14 83.2 76 59.2
Cc09_g05420 Coffea canephora HOM05D000343 ORTHO05D000975 1.8e-14 82.8 78 56.4
Gohir.A12G048300 Gossypium hirsutum HOM05D000343 ORTHO05D000975 1.8e-14 82.8 88 58.0
A09p21340 Brassica napus HOM05D000343 ORTHO05D000975 2.3e-14 82.4 88 53.4
BolC7t43309H Brassica oleracea HOM05D000343 ORTHO05D000975 3.0e-14 82.0 84 56.0
SalBow7G3790 Salvia bowleyana HOM05D000343 ORTHO05D000975 3.0e-14 82.0 76 57.9
Solyc02g068490.4 Solanum lycopersicum HOM05D000343 ORTHO05D000975 3.9e-14 81.6 80 56.2
C07p27770 Brassica napus HOM05D000343 ORTHO05D000975 5.1e-14 81.3 81 58.0
THA.LOC104806219 Tarenaya hassleriana HOM05D000343 ORTHO05D000975 5.1e-14 81.3 92 52.2
AT5G44790 Arabidopsis thaliana HOM05D000343 ORTHO05D000975 6.7e-14 80.9 85 55.3
BcaC04g21815 Brassica carinata HOM05D000343 ORTHO05D000975 6.7e-14 80.9 88 52.3
C09p27180 Brassica napus HOM05D000343 ORTHO05D000975 6.7e-14 80.9 88 52.3
BolC9t55599H Brassica oleracea HOM05D000343 ORTHO05D000975 6.7e-14 80.9 88 52.3
Potri.001G158900 Populus trichocarpa HOM05D000343 ORTHO05D000975 6.7e-14 80.9 88 55.7
Hund17872 Selenicereus undatus HOM05D000343 ORTHO05D000975 6.7e-14 80.9 86 52.3
Sopen02g017630 Solanum pennellii HOM05D000343 ORTHO05D000975 6.7e-14 80.9 80 56.2
Lj6g0027980 Lotus japonicus HOM05D000343 ORTHO05D000975 8.7e-14 80.5 80 56.2
CDE06G1492 Ceratophyllum demersum HOM05D000343 ORTHO05D000975 1.1e-13 80.1 82 51.2
PGSC0003DMG400009436 Solanum tuberosum HOM05D000343 ORTHO05D000975 1.5e-13 79.7 79 55.7
Lalb_Chr07g0188341 Lupinus albus HOM05D000343 ORTHO05D000975 1.9e-13 79.3 79 57.0
Medtr4g094695 Medicago truncatula HOM05D000343 ORTHO05D000975 1.9e-13 79.3 76 64.5
Gohir.D12G047100 Gossypium hirsutum HOM05D000343 ORTHO05D000975 2.5e-13 79.0 88 55.7
Gorai.008G049700 Gossypium raimondii HOM05D000343 ORTHO05D000975 2.5e-13 79.0 88 55.7
Glyma.05G132900 Glycine max HOM05D000343 ORTHO05D000975 3.3e-13 78.6 76 59.2
Glyma.08G087300 Glycine max HOM05D000343 ORTHO05D000975 3.3e-13 78.6 76 59.2
BcaB07g30924 Brassica carinata HOM05D000343 ORTHO05D000975 4.3e-13 78.2 92 48.9
Lsat_1_v5_gn_8_117941 Lactuca sativa HOM05D000343 ORTHO05D000975 4.3e-13 78.2 92 50.0
VMungo0251G3666 Vigna mungo HOM05D000343 ORTHO05D000975 5.6e-13 77.8 76 63.2
Glyma.15G158300 Glycine max HOM05D000343 ORTHO05D000975 7.4e-13 77.4 80 56.2
Sabra01G0132900 Salix brachista HOM05D000343 ORTHO05D000975 7.4e-13 77.4 88 52.3
VMungo1309G2201 Vigna mungo HOM05D000343 ORTHO05D000975 7.4e-13 77.4 78 55.1
ECA232G4854 Erigeron canadensis HOM05D000343 ORTHO05D000975 9.6e-13 77.0 94 50.0
EL10Ac7g17239 Beta vulgaris HOM05D000343 ORTHO05D000975 1.3e-12 76.6 79 55.7
Peaxi162Scf00199g00810 Petunia axillaris HOM05D000343 ORTHO05D000975 1.3e-12 76.6 76 56.6
Phvul.002G190000 Phaseolus vulgaris HOM05D000343 ORTHO05D000975 2.1e-12 75.9 76 61.8
HPP92_016425 Vanilla planifolia HOM05D000343 ORTHO05D000975 2.1e-12 75.9 85 51.8
AUR62040482 Chenopodium quinoa HOM05D000343 ORTHO05D000975 2.8e-12 75.5 76 57.9
HPP92_026364 Vanilla planifolia HOM05D000343 ORTHO05D000975 2.8e-12 75.5 85 50.6
AUR62042799 Chenopodium quinoa HOM05D000343 ORTHO05D000975 4.8e-12 74.7 76 57.9
Lj4g0015974 Lotus japonicus HOM05D000343 ORTHO05D000975 4.8e-12 74.7 79 63.3
Ah.15g091900 Amaranthus hybridus HOM05D000343 ORTHO05D000975 8.2e-12 73.9 80 51.2
HanXRQChr15g0487371 Helianthus annuus HOM05D000343 ORTHO05D000975 8.2e-12 73.9 84 51.2
Medtr2g035840 Medicago truncatula HOM05D000343 ORTHO05D000975 8.2e-12 73.9 79 53.2
Nitab4.5_0000138g0130 Nicotiana tabacum HOM05D000343 ORTHO05D000975 8.2e-12 73.9 76 52.6
Nitab4.5_0008021g0010 Nicotiana tabacum HOM05D000343 ORTHO05D000975 1.1e-11 73.6 76 55.3
Ciclev10014141m.g Citrus clementina HOM05D000343 ORTHO05D000975 2.4e-11 72.4 76 56.6
Oeu052641.2 Olea europaea HOM05D000343 ORTHO05D021090 3.1e-11 72.0 76 53.9
Sabra03G0046200 Salix brachista HOM05D000343 ORTHO05D000975 3.1e-11 72.0 84 52.4
unitig_747.g21639 Utricularia gibba HOM05D000343 ORTHO05D000975 3.1e-11 72.0 76 53.9
Potri.003G075700 Populus trichocarpa HOM05D000343 ORTHO05D000975 5.3e-11 71.2 86 54.7
Aa31LG9G8380 Aethionema arabicum HOM05D000343 ORTHO05D000975 6.9e-11 70.9 87 49.4
DCAR_003767 Daucus carota HOM05D000343 ORTHO05D000975 1.2e-10 70.1 81 55.6
MBI02_g08254_MAGBIO Magnolia biondii HOM05D000343 ORTHO05D000975 2.0e-10 69.3 82 50.0
Psat1g149800 Pisum sativum HOM05D000343 ORTHO05D000975 3.4e-10 68.6 75 54.7
ATR0763G107 Amborella trichopoda HOM05D000343 ORTHO05D000975 1.7e-09 66.2 79 50.6
Oeu056056.1 Olea europaea HOM05D000343 ORTHO05D000975 8.4e-09 63.9 51 62.7
MSTRG.16366 Avicennia marina HOM05D000343 ORTHO05D000975 1.9e-08 62.8 77 50.6
Migut.M02001 Erythranthe guttata HOM05D000343 ORTHO05D000975 3.2e-08 62.0 70 51.4
SEGI_37469 Sequoiadendron giganteum HOM05D000343 ORTHO05D000975 5.5e-08 61.2 76 46.1
Zm00001eb207090 Zea mays HOM05D000343 ORTHO05D000975 7.1e-08 60.8 75 46.7
CAN.G1299.9 Capsicum annuum HOM05D000343 ORTHO05D000975 1.6e-07 59.7 59 54.2
SGA_v2.0_scaffold175G39348 Striga asiatica HOM05D000343 ORTHO05D000975 7.9e-07 57.4 73 47.9
Os02g0172600 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D000975 1.0e-06 57.0 74 45.9
MSTRG.7605 Avicennia marina HOM05D000343 ORTHO05D000975 1.3e-06 56.6 80 47.5
SalBow8G0685 Salvia bowleyana HOM05D000343 ORTHO05D000975 3.9e-06 55.1 76 43.4
SGA_v2.0_scaffold298G47705 Striga asiatica HOM05D000343 ORTHO05D000975 5.1e-06 54.7 75 45.3


User provided reference genes

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