Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 7.9e-50 200.3 112 100.0
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 8.2e-47 190.3 112 96.4
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 2.5e-40 168.7 112 75.0
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 1.8e-38 162.5 110 73.6
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 1.2e-29 133.3 110 64.5
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 2.6e-29 132.1 107 63.6
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 3.4e-29 131.7 104 64.4
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 2.9e-28 128.6 113 62.8
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 5.5e-27 124.4 99 66.7
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 1.2e-26 123.2 113 60.2
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 1.6e-26 122.9 110 58.2
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 6.1e-26 120.9 100 64.0
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 1.4e-25 119.8 114 59.6
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 3.9e-25 118.2 110 59.1
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.1e-24 116.7 101 63.4
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.1e-24 116.7 101 63.4
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 3.3e-24 115.2 97 63.9
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 3.3e-24 115.2 71 80.3
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 4.8e-23 111.3 111 55.9
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 6.3e-23 110.9 113 56.6
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 1.4e-22 109.8 114 54.4
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 1.4e-22 109.8 111 54.1
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 3.1e-22 108.6 109 56.9
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 4.1e-22 108.2 101 58.4
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 5.3e-22 107.8 109 56.0
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 7.0e-22 107.5 69 78.3
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 9.1e-22 107.1 73 72.6
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 2.0e-21 105.9 98 57.1
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 5.9e-21 104.4 74 71.6
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 1.0e-20 103.6 109 54.1
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 1.0e-20 103.6 116 50.9
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 1.0e-20 103.6 72 68.1
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 1.3e-20 103.2 69 69.6
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.3e-20 103.2 112 57.1
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.2e-20 102.4 74 70.3
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 2.2e-20 102.4 118 50.0
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 3.8e-20 101.7 112 56.2
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 3.8e-20 101.7 75 72.0
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 5.0e-20 101.3 113 53.1
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 8.5e-20 100.5 112 55.4
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 1.1e-19 100.1 114 50.9
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 1.5e-19 99.8 119 56.3
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.9e-19 99.4 72 65.3
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 1.9e-19 99.4 98 56.1
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 1.9e-19 99.4 101 56.4
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 3.2e-19 98.6 99 57.6
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 3.2e-19 98.6 99 57.6
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 5.5e-19 97.8 101 54.5
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 5.5e-19 97.8 68 72.1
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 5.5e-19 97.8 103 53.4
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 5.5e-19 97.8 93 58.1
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 7.2e-19 97.4 115 49.6
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 7.2e-19 97.4 99 57.6
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 9.4e-19 97.1 72 63.9
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 9.4e-19 97.1 111 53.2
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 1.6e-18 96.3 99 57.6
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 2.1e-18 95.9 110 60.9
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 2.1e-18 95.9 99 57.6
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 2.1e-18 95.9 115 47.0
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.6e-18 95.1 92 57.6
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 4.7e-18 94.7 72 69.4
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 4.7e-18 94.7 115 47.8
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 6.1e-18 94.4 98 56.1
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.4e-17 93.2 125 52.0
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 1.8e-17 92.8 94 56.4
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 5.2e-17 91.3 61 70.5
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 1.5e-16 89.7 60 66.7
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 4.4e-16 88.2 61 67.2
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 4.4e-16 88.2 101 49.5
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 4.4e-16 88.2 68 66.2
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 4.4e-16 88.2 61 68.9
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 9.7e-16 87.0 100 52.0
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 9.7e-16 87.0 69 63.8
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 1.3e-15 86.7 62 71.0
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 2.8e-15 85.5 83 54.2
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 2.8e-15 85.5 83 54.2
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 4.8e-15 84.7 115 44.3
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 4.8e-15 84.7 90 55.6
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 1.1e-14 83.6 60 65.0
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 1.8e-14 82.8 101 51.5
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 2.4e-14 82.4 65 64.6
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 2.4e-14 82.4 101 53.5
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 3.1e-14 82.0 59 69.5
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 3.1e-14 82.0 59 69.5
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 3.1e-14 82.0 59 69.5
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 3.1e-14 82.0 57 70.2
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 4.1e-14 81.6 93 49.5
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 4.1e-14 81.6 102 49.0
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 5.3e-14 81.3 89 56.2
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 9.1e-14 80.5 69 65.2
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 1.6e-13 79.7 52 67.3
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 2.0e-13 79.3 108 43.5
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 2.0e-13 79.3 100 51.0
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 2.7e-13 79.0 90 52.2
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 5.9e-13 77.8 96 50.0
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 1.0e-12 77.0 70 55.7
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 1.0e-12 77.0 58 62.1
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 3.8e-12 75.1 124 45.2
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 8.5e-12 73.9 68 54.4
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 8.5e-12 73.9 103 47.6
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 1.1e-11 73.6 70 54.3
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 1.9e-11 72.8 85 45.9
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 3.2e-11 72.0 63 63.5
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 5.5e-11 71.2 59 55.9
Peaxi162Scf00025g00208 Petunia axillaris HOM05D006882 ORTHO05D008688 6.1e-10 67.8 68 58.8
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 8.0e-10 67.4 54 66.7
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 8.0e-10 67.4 68 58.8
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 2.8e-07 58.9 44 63.6
CDE04G1794 Ceratophyllum demersum HOM05D006882 ORTHO05D008688 8.3e-07 57.4 78 42.3
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 8.3e-07 57.4 64 46.9
arahy.Tifrunner.gnm1.ann1.K9PA59 Arachis hypogaea HOM05D006882 ORTHO05D008688 1.1e-06 57.0 45 62.2
Lsat_1_v5_gn_4_172620 Lactuca sativa HOM05D006882 ORTHO05D048217 9.1e-06 53.9 63 42.9


User provided reference genes

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