Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 0.0e+00 1158.3 614 100.0
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 2.1e-293 1011.9 699 80.0
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 2.2e-239 832.4 635 76.1
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 5.7e-227 791.2 616 73.9
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 9.5e-198 694.1 619 66.4
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 1.2e-195 687.2 631 64.8
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.8e-194 682.2 633 65.1
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 9.2e-193 677.6 619 65.4
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 2.8e-189 666.0 477 76.9
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 2.8e-189 666.0 637 64.1
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 6.2e-189 664.8 619 64.9
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 4.2e-185 652.1 633 63.3
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 3.3e-182 642.5 642 61.8
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 3.6e-181 639.0 655 61.5
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 4.8e-181 638.6 630 61.1
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 5.3e-180 635.2 632 62.3
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 1.7e-178 630.2 627 60.9
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.4e-177 627.1 652 60.6
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 9.3e-177 624.4 637 61.2
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 7.9e-176 621.3 633 60.2
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 1.1e-174 617.5 656 59.6
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 8.1e-173 611.3 655 58.8
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 1.4e-172 610.5 623 59.2
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 1.4e-172 610.5 632 59.3
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.3e-170 604.0 656 58.8
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 4.2e-169 599.0 662 59.1
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 1.2e-168 597.4 623 58.7
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 6.0e-168 595.1 514 68.3
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 2.4e-164 583.2 620 59.2
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 1.0e-162 577.8 599 60.9
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 1.1e-161 574.3 622 58.2
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 1.6e-160 570.5 625 57.6
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 1.3e-159 567.4 674 54.7
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 3.0e-159 566.2 689 53.6
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 1.6e-157 560.5 498 67.5
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.8e-157 559.7 525 64.6
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 8.2e-157 558.1 637 57.0
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 3.4e-155 552.7 668 55.1
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 6.3e-149 531.9 760 49.7
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 1.8e-148 530.4 760 49.6
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 2.4e-148 530.0 538 61.5
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 5.5e-145 518.8 616 55.0
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 1.2e-144 517.7 618 54.7
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 2.7e-144 516.5 531 59.1
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 8.2e-141 505.0 627 53.7
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 3.1e-140 503.1 611 53.8
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 2.0e-139 500.4 677 50.7
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 2.0e-139 500.4 651 52.1
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 2.9e-138 496.5 610 53.1
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 3.8e-138 496.1 655 52.1
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 4.2e-137 492.7 628 52.1
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 7.4e-134 481.9 628 52.2
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 9.7e-134 481.5 585 53.0
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 2.2e-133 480.3 630 51.4
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 8.2e-133 478.4 631 52.1
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 1.6e-131 474.2 709 46.5
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 1.6e-131 474.2 689 49.6
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 2.0e-131 473.8 621 49.6
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 2.0e-131 473.8 517 58.8
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 1.3e-130 471.1 594 52.4
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 8.5e-130 468.4 582 52.4
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 9.4e-129 464.9 630 51.3
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 9.4e-129 464.9 408 68.6
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 2.1e-128 463.8 655 47.8
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 2.7e-128 463.4 607 51.6
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 4.7e-128 462.6 629 49.9
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 8.8e-127 458.4 616 49.7
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 9.7e-126 454.9 631 49.9
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 4.8e-125 452.6 795 43.6
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 1.2e-123 448.0 627 48.0
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 2.0e-123 447.2 505 56.4
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 7.7e-123 445.3 486 56.6
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.3e-122 444.5 667 46.9
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 1.7e-122 444.1 619 49.8
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 3.8e-122 443.0 609 50.9
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 4.2e-121 439.5 607 49.6
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 4.7e-120 436.0 607 49.4
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 4.4e-118 429.5 616 48.7
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 1.3e-117 427.9 534 52.2
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 2.8e-117 426.8 616 48.7
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 2.8e-117 426.8 616 48.7
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 4.8e-117 426.0 495 55.6
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 1.1e-116 424.9 510 53.5
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 1.8e-116 424.1 534 55.6
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 7.0e-116 422.2 631 46.8
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.2e-115 421.4 569 52.4
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 1.6e-115 421.0 616 47.9
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 5.9e-115 419.1 611 47.6
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 9.5e-113 411.8 495 53.9
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 1.2e-110 404.8 687 43.7
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 3.2e-108 396.7 595 47.2
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 2.7e-107 393.7 394 60.4
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 2.0e-102 377.5 627 46.3
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 4.6e-99 366.3 434 54.8
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 5.6e-97 359.4 382 59.2
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 7.8e-91 339.0 618 40.9
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 1.4e-87 328.2 370 58.6
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.3e-87 327.4 261 66.7
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 8.9e-87 325.5 400 52.8
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 8.9e-87 325.5 400 52.8
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 2.2e-85 320.9 253 70.0
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 4.4e-78 296.6 247 68.4
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.7e-77 294.7 302 58.3
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 2.9e-77 293.9 610 40.0
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 4.9e-69 266.5 317 49.8
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 1.1e-63 248.8 250 61.6
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.6e-62 244.2 393 46.6
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 4.0e-55 220.3 456 38.2
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 2.9e-53 214.2 379 44.3
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 3.8e-53 213.8 232 53.0
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 3.7e-48 197.2 170 63.5
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 2.4e-39 167.9 137 64.2
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 5.9e-38 163.3 246 48.4
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 7.2e-36 156.4 156 59.0
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 7.9e-35 152.9 129 62.8
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 1.5e-33 148.7 106 73.6
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 1.7e-32 145.2 122 65.6
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.3e-29 135.6 244 42.2
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 1.1e-25 122.5 173 49.7
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 7.7e-22 109.8 247 37.2
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 1.0e-21 109.4 397 28.2
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 9.4e-20 102.8 165 48.5
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 1.1e-17 95.9 70 71.4
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 5.0e-13 80.5 103 49.5
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 5.5e-12 77.0 151 41.1
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 1.0e-10 72.8 70 57.1
Oeu051017.1 Olea europaea HOM05D020362 ORTHO05D030297 1.7e-08 65.5 138 32.6
SGA_v2.0_scaffold52G19163 Striga asiatica HOM05D020362 ORTHO05D030297 5.4e-07 60.5 131 37.4
Gohir.D10G229300 Gossypium hirsutum HOM05D000032 ORTHO05D005217 7.0e-07 60.1 172 30.2
Gorai.011G261800 Gossypium raimondii HOM05D000032 ORTHO05D005217 7.0e-07 60.1 172 30.2
Gohir.A10G219800 Gossypium hirsutum HOM05D000032 ORTHO05D005217 1.2e-06 59.3 172 30.2


User provided reference genes

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