Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 1.8e-147 525.8 250 100.0
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 2.1e-127 459.1 249 84.3
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 8.0e-127 457.2 250 83.2
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 7.5e-125 450.7 250 81.6
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 8.3e-124 447.2 250 81.2
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 1.8e-123 446.0 250 82.0
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 3.1e-123 445.3 250 80.8
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 1.2e-122 443.4 250 80.4
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 1.6e-122 443.0 250 80.0
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.6e-122 443.0 250 80.0
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 2.0e-122 442.6 250 81.6
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 4.5e-122 441.4 248 79.8
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 7.7e-122 440.7 250 79.6
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 5.0e-121 438.0 250 80.8
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 6.6e-121 437.6 250 79.6
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 8.6e-121 437.2 250 80.8
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 8.6e-121 437.2 250 80.8
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 1.9e-120 436.0 250 80.0
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 2.5e-120 435.6 250 79.6
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 1.2e-119 433.3 250 78.8
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 3.4e-117 425.2 250 77.2
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 4.9e-116 421.4 250 77.2
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 1.1e-115 420.2 250 76.4
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 2.4e-115 419.1 250 74.4
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 2.4e-115 419.1 250 75.2
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 2.4e-115 419.1 251 76.1
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 7.0e-115 417.5 250 79.2
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 9.2e-115 417.2 250 76.8
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 1.2e-114 416.8 250 76.4
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.6e-114 416.4 251 75.3
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 2.0e-114 416.0 251 74.5
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 4.6e-114 414.8 251 74.9
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 7.8e-114 414.1 250 75.6
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 7.8e-114 414.1 251 74.9
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 1.0e-113 413.7 252 76.2
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 1.3e-113 413.3 251 74.5
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 1.7e-113 412.9 252 75.8
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 6.6e-113 411.0 251 74.5
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 6.6e-113 411.0 251 74.1
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 7.3e-112 407.5 254 74.4
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 9.5e-112 407.1 250 75.6
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 1.6e-111 406.4 252 74.6
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 3.6e-111 405.2 251 73.7
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 6.2e-111 404.4 201 95.0
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 6.2e-111 404.4 252 74.2
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 6.2e-111 404.4 250 73.6
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 8.0e-111 404.1 250 73.2
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 5.2e-110 401.4 250 74.0
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 8.9e-110 400.6 250 72.0
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 1.2e-109 400.2 252 72.2
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 2.0e-109 399.4 250 73.6
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 3.4e-109 398.7 252 72.6
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 5.8e-109 397.9 250 73.2
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 9.8e-109 397.1 250 71.6
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 1.3e-108 396.7 250 73.6
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 1.7e-108 396.4 250 71.2
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 2.2e-108 396.0 252 73.4
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 2.9e-108 395.6 250 70.0
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 6.4e-108 394.4 249 68.7
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 6.4e-108 394.4 252 72.6
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 8.3e-108 394.0 252 71.8
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 1.9e-107 392.9 250 71.2
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 2.4e-107 392.5 250 71.2
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 4.1e-107 391.7 250 70.4
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 2.7e-106 389.0 252 71.0
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 6.0e-106 387.9 250 73.2
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 1.3e-105 386.7 250 68.8
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 5.0e-105 384.8 252 71.0
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 6.6e-105 384.4 250 74.8
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 1.9e-104 382.9 228 77.6
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 3.3e-104 382.1 250 70.0
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 2.1e-103 379.4 250 68.8
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 1.1e-102 377.1 249 69.5
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 3.4e-101 372.1 250 68.0
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 2.4e-99 365.9 252 66.3
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 4.1e-99 365.2 250 65.6
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 2.1e-98 362.8 245 66.9
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 3.5e-98 362.1 250 66.0
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 7.8e-98 360.9 252 65.5
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 7.8e-98 360.9 262 66.0
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 2.3e-97 359.4 252 64.7
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 2.3e-97 359.4 252 64.7
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 2.3e-97 359.4 252 64.7
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 2.3e-97 359.4 252 64.7
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 3.0e-97 359.0 245 66.5
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 3.9e-97 358.6 250 63.6
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 8.6e-97 357.5 252 64.3
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 1.5e-96 356.7 253 66.4
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 2.5e-96 355.9 251 64.5
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 3.3e-96 355.5 249 63.1
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 5.6e-96 354.8 252 65.1
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 1.6e-95 353.2 252 64.3
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 2.1e-95 352.8 252 63.9
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 6.2e-95 351.3 251 63.7
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 2.3e-94 349.4 252 64.3
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 4.0e-94 348.6 252 63.1
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 3.0e-89 332.4 238 63.9
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 1.1e-86 323.9 240 58.3
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 3.4e-85 318.9 250 57.6
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 7.3e-80 301.2 245 58.8
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 2.1e-79 299.7 248 56.5
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 2.4e-78 296.2 247 56.7
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 2.9e-76 289.3 247 55.9
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 8.4e-76 287.7 247 55.5
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.1e-72 277.3 154 77.3
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 8.1e-71 271.2 250 51.2
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 1.3e-63 247.3 267 47.6
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 8.1e-63 244.6 253 45.5
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 9.3e-59 231.1 139 77.7
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 1.4e-54 217.2 259 48.3
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 1.4e-51 207.2 111 81.1
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 1.4e-51 207.2 287 43.2
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 7.9e-42 174.9 99 82.8
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 5.7e-32 142.1 95 67.4
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 3.6e-26 122.9 72 66.7
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 2.6e-24 116.7 100 60.0
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 1.3e-23 114.4 55 85.5
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 8.5e-20 101.7 153 43.1
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 5.5e-19 99.0 52 73.1
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 7.0e-14 82.0 45 80.0
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 7.5e-08 62.0 106 34.9
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 9.8e-08 61.6 129 34.1
AagrBONN_evm.TU.Sc2ySwM_368.1069 Anthoceros agrestis HOM05D027965 ORTHO05D007451 3.1e-06 56.6 134 28.4
DCAR_013619 Daucus carota HOM05D007529 ORTHO05D007451 3.1e-06 56.6 184 26.6
FAN07G2804 Fragaria x ananassa HOM05D007529 ORTHO05D007451 4.1e-06 56.2 111 32.4
FAN22G0851 Fragaria x ananassa HOM05D007529 ORTHO05D007451 4.1e-06 56.2 110 30.9
FvH4_4g15570 Fragaria vesca HOM05D007529 ORTHO05D007451 9.2e-06 55.1 110 30.9
Manes.09G016732 Manihot esculenta HOM05D007529 ORTHO05D007451 9.2e-06 55.1 110 30.9


User provided reference genes

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