Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 4.3e-264 914.1 454 100.0
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 1.4e-238 829.3 520 83.3
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 4.7e-234 814.3 454 89.2
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 8.3e-231 803.5 454 89.0
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 3.1e-230 801.6 461 88.1
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 5.4e-230 800.8 461 88.1
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 1.2e-229 799.7 454 87.7
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 4.5e-229 797.7 454 85.9
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 1.0e-228 796.6 453 86.5
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 1.1e-227 793.1 454 86.8
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 5.5e-227 790.8 454 86.8
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 9.5e-227 790.0 454 86.6
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 3.6e-226 788.1 454 85.7
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 6.1e-226 787.3 453 85.7
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 6.1e-226 787.3 454 85.5
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 1.4e-225 786.2 454 86.8
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 3.0e-225 785.0 453 86.1
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 4.0e-225 784.6 454 84.4
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 4.0e-225 784.6 454 84.1
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 5.2e-225 784.3 454 84.1
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 6.8e-225 783.9 454 84.6
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 1.2e-224 783.1 452 85.4
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 3.7e-223 778.1 460 86.1
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 7.0e-222 773.9 457 86.0
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 7.0e-222 773.9 454 84.6
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 7.0e-222 773.9 454 83.0
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 9.2e-222 773.5 457 86.0
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 9.2e-222 773.5 456 86.0
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 1.6e-221 772.7 453 85.7
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 3.5e-221 771.5 455 84.6
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 5.9e-221 770.8 458 83.2
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 1.3e-220 769.6 457 85.3
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 2.5e-219 765.4 454 84.6
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 3.3e-219 765.0 475 83.2
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 2.8e-218 761.9 458 83.8
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 3.0e-217 758.4 460 83.3
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 4.0e-217 758.1 457 82.7
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 8.9e-217 756.9 471 81.3
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 2.0e-216 755.7 460 82.8
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 2.6e-216 755.4 456 82.0
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 7.5e-216 753.8 457 82.9
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 7.5e-216 753.8 475 82.1
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 4.9e-215 751.1 455 83.7
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 1.1e-214 750.0 472 80.5
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 1.2e-213 746.5 457 82.3
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 3.5e-213 745.0 459 82.4
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 4.6e-213 744.6 455 81.8
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 7.8e-213 743.8 455 83.7
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 7.8e-213 743.8 454 83.5
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 1.7e-212 742.7 455 83.3
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 2.3e-212 742.3 459 81.9
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 3.9e-212 741.5 451 82.9
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 5.0e-212 741.1 460 80.2
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 5.0e-212 741.1 455 83.3
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 7.3e-211 737.3 451 82.0
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 7.3e-211 737.3 459 81.7
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 4.0e-209 731.5 458 80.3
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 4.4e-208 728.0 458 80.3
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 1.3e-207 726.5 431 83.5
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 8.3e-207 723.8 457 80.5
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 1.4e-206 723.0 446 81.4
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 3.2e-206 721.8 452 80.1
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 4.1e-206 721.5 453 81.2
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 1.6e-205 719.5 456 79.4
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 2.0e-205 719.2 445 80.4
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 2.7e-205 718.8 444 81.5
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 2.3e-204 715.7 456 80.0
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 1.5e-203 713.0 454 80.2
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 1.9e-203 712.6 456 78.5
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 2.8e-202 708.8 423 83.7
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 8.1e-202 707.2 443 81.3
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 1.4e-201 706.4 446 79.8
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 2.3e-201 705.7 443 80.8
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 4.0e-201 704.9 454 79.3
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 1.2e-200 703.4 454 79.7
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 1.2e-200 703.4 446 79.6
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 4.4e-200 701.4 454 79.5
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 4.1e-198 694.9 461 77.2
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 1.0e-196 690.3 464 77.4
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 1.1e-195 686.8 457 77.5
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 1.6e-194 682.9 468 76.9
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 3.6e-194 681.8 454 79.5
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 8.1e-194 680.6 457 77.2
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 1.4e-193 679.9 362 92.0
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 6.8e-193 677.6 459 74.7
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.2e-190 668.7 357 92.2
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 2.3e-188 662.5 460 74.8
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 1.5e-184 649.8 443 76.1
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 1.1e-182 643.7 370 85.7
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 2.4e-177 625.9 389 76.9
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 2.0e-176 622.9 332 91.9
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 6.2e-170 601.3 332 88.3
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 1.4e-169 600.1 403 73.2
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 2.3e-164 582.8 428 66.8
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.6e-162 576.6 417 74.1
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 1.8e-161 573.2 383 71.8
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 5.3e-161 571.6 360 81.4
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 5.3e-161 571.6 356 81.7
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.4e-158 563.5 456 66.9
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 1.5e-155 553.5 388 68.0
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 9.0e-153 544.3 288 91.7
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 7.7e-144 514.6 311 81.0
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 1.0e-143 514.2 315 83.8
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 5.0e-143 511.9 279 90.0
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 2.6e-139 499.6 414 61.4
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 2.2e-135 486.5 415 64.3
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 9.4e-134 481.1 318 75.5
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 4.8e-130 468.8 413 62.5
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.0e-127 461.1 332 73.2
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.3e-127 460.7 236 93.6
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.3e-127 460.7 236 93.6
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 1.2e-112 411.0 413 49.9
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 1.8e-92 344.0 242 75.6
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 3.6e-77 293.1 318 46.9
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 5.1e-63 246.1 360 40.6
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 9.3e-57 225.3 149 73.8
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 3.5e-56 223.4 402 36.1
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.1e-52 211.8 404 36.9
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 1.1e-49 201.8 349 35.5
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.4e-49 201.4 380 34.2
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.6e-48 198.0 117 83.8
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 2.3e-47 194.1 149 67.1
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 9.6e-46 188.7 369 33.3
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 8.2e-45 185.7 102 86.3
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 3.2e-41 173.7 100 85.0
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 4.3e-38 163.3 96 87.5
MD09G1061200 Malus domestica HOM05D005960 ORTHO05D007537 2.6e-22 110.9 90 62.2
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 4.8e-21 106.7 51 88.2
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 2.3e-15 87.8 51 90.2
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 5.5e-09 66.6 150 29.3
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 4.7e-08 63.5 38 84.2
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 8.0e-08 62.8 42 76.2


User provided reference genes

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