Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 6.6e-134 480.7 244 100.0
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 1.7e-129 466.1 244 96.3
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 4.0e-115 418.3 244 85.2
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 3.4e-114 415.2 243 84.8
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 3.4e-106 388.7 244 78.3
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 6.4e-105 384.4 243 76.1
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.9e-104 382.9 243 75.7
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 3.0e-102 375.6 240 78.8
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 3.9e-102 375.2 243 75.3
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 1.5e-101 373.2 240 77.5
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 1.5e-101 373.2 240 77.5
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 3.3e-101 372.1 244 74.2
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.6e-100 369.8 244 76.6
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 2.8e-100 369.0 244 74.6
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 3.7e-100 368.6 244 74.2
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 1.8e-99 366.3 226 80.5
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.8e-99 366.3 244 74.2
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 2.4e-99 365.9 240 73.8
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 5.3e-99 364.8 244 72.1
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 6.9e-99 364.4 240 75.4
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 9.0e-99 364.0 243 73.3
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 1.2e-98 363.6 240 74.6
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 1.2e-98 363.6 244 73.8
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 2.0e-98 362.8 244 73.4
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 2.6e-98 362.5 244 73.4
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 2.6e-98 362.5 244 71.3
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 3.4e-98 362.1 244 75.0
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 4.5e-98 361.7 240 73.3
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 4.5e-98 361.7 244 73.8
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 5.8e-98 361.3 234 74.4
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 5.8e-98 361.3 240 74.6
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 5.8e-98 361.3 244 73.0
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 5.8e-98 361.3 240 73.3
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 7.6e-98 360.9 234 77.8
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 7.6e-98 360.9 244 74.2
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 1.3e-97 360.1 244 74.6
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 3.8e-97 358.6 244 71.7
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 4.9e-97 358.2 240 74.2
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 8.4e-97 357.5 240 73.8
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 1.4e-96 356.7 244 72.1
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 1.4e-96 356.7 240 74.2
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 1.9e-96 356.3 240 73.8
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 2.4e-96 355.9 245 71.4
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 3.2e-96 355.5 222 76.6
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 3.2e-96 355.5 224 76.3
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 5.5e-96 354.8 241 72.2
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 5.5e-96 354.8 244 70.5
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 1.2e-95 353.6 244 72.1
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 1.6e-95 353.2 244 70.5
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 2.1e-95 352.8 244 70.1
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 3.5e-95 352.1 246 71.1
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 4.6e-95 351.7 227 75.8
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 6.0e-95 351.3 227 75.3
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 6.0e-95 351.3 227 75.3
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 1.0e-94 350.5 226 74.8
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 6.7e-94 347.8 258 68.2
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 8.7e-94 347.4 227 77.1
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 1.5e-93 346.7 233 71.7
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.5e-93 345.9 228 77.2
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 3.3e-93 345.5 246 68.3
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 3.3e-93 345.5 243 70.8
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 3.3e-93 345.5 243 70.8
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 3.3e-93 345.5 279 66.7
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 4.3e-93 345.1 232 72.8
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 4.3e-93 345.1 232 72.8
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 4.3e-93 345.1 232 72.8
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 4.3e-93 345.1 232 72.8
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 7.4e-93 344.4 232 72.8
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 7.4e-93 344.4 242 68.6
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 9.6e-93 344.0 224 74.6
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 2.1e-92 342.8 239 72.4
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 3.7e-92 342.0 240 71.2
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 1.4e-91 340.1 235 68.5
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.4e-91 340.1 258 66.7
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 2.4e-91 339.3 240 67.5
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 3.1e-91 339.0 244 68.4
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 3.1e-91 339.0 244 68.0
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 3.4e-90 335.5 244 68.9
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 7.6e-90 334.3 277 65.7
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 1.7e-89 333.2 245 67.8
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 2.9e-89 332.4 238 65.5
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 3.8e-89 332.0 232 71.1
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 1.1e-88 330.5 233 70.0
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.4e-88 330.1 229 72.1
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 2.5e-88 329.3 245 66.1
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 3.9e-86 322.0 239 65.7
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.9e-81 305.8 195 80.0
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 3.8e-81 305.4 211 69.2
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 8.5e-81 304.3 222 65.8
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 9.4e-80 300.8 237 63.7
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 4.3e-77 292.0 220 69.1
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 9.7e-77 290.8 244 64.8
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 3.7e-76 288.9 197 71.6
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 1.5e-74 283.5 242 57.4
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 1.2e-71 273.9 190 73.2
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 1.2e-66 257.3 184 71.7
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 1.7e-65 253.4 222 57.7
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 5.5e-64 248.4 225 52.0
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 3.0e-62 242.7 155 74.2
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 2.2e-57 226.5 226 54.4
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 2.9e-57 226.1 227 54.6
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 2.5e-56 223.0 228 52.6
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 3.5e-50 202.6 138 73.9
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.9e-48 196.8 155 60.6
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 5.5e-48 195.3 260 42.7
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 4.7e-47 192.2 128 75.8
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 1.0e-46 191.0 239 46.9
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 8.8e-46 188.0 240 46.7
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 8.3e-44 181.4 199 51.3
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 5.0e-41 172.2 232 41.8
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 3.3e-40 169.5 211 50.2
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 2.5e-32 143.3 172 46.5
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 7.3e-32 141.7 268 36.9
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 2.0e-29 133.7 109 67.9
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 1.3e-25 120.9 79 73.4
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 8.0e-23 111.7 72 70.8
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 6.8e-22 108.6 64 78.1
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 5.1e-17 92.4 65 73.8
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 2.3e-14 83.6 127 40.9
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 6.8e-14 82.0 47 83.0
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 9.2e-11 71.6 50 72.0
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 2.7e-10 70.1 118 35.6
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 8.1e-07 58.5 47 53.2
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 1.1e-06 58.2 39 69.2
unitig_46.g18777 Utricularia gibba HOM05D004879 ORTHO05D425869 4.0e-06 56.2 57 50.9


User provided reference genes

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