Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007572 Carpinus fangiana HOM05D008206 ORTHO05D010320 3.1e-37 157.9 78 100.0
Haze_14514 Corylus avellana HOM05D008206 ORTHO05D010320 1.0e-32 142.9 78 91.0
CiPaw.03G025300 Carya illinoinensis HOM05D008206 ORTHO05D010320 6.1e-25 117.1 78 79.5
CiPaw.04G016300 Carya illinoinensis HOM05D008206 ORTHO05D010320 1.3e-22 109.4 76 73.7
Cpa.g.sc14.94 Carica papaya HOM05D008206 ORTHO05D010320 7.0e-21 103.6 78 66.7
Thecc.04G083900 Theobroma cacao HOM05D008206 ORTHO05D010320 2.9e-19 98.2 75 69.3
Gohir.A10G100200 Gossypium hirsutum HOM05D008206 ORTHO05D010320 5.0e-19 97.4 76 64.5
Thecc.04G084200 Theobroma cacao HOM05D008206 ORTHO05D010320 1.6e-17 92.4 75 66.7
TAR629G1342 Trochodendron aralioides HOM05D008206 ORTHO05D010320 2.8e-17 91.7 77 59.7
MD00G1125200 Malus domestica HOM05D008206 ORTHO05D010320 6.1e-17 90.5 77 61.0
Gohir.D10G088300 Gossypium hirsutum HOM05D008206 ORTHO05D010320 8.0e-17 90.1 76 61.8
Ciclev10013233m.g Citrus clementina HOM05D008206 ORTHO05D010320 1.8e-16 89.0 78 56.4
Manes.02G047166 Manihot esculenta HOM05D008206 ORTHO05D010320 3.0e-16 88.2 77 63.6
MD09G1052600 Malus domestica HOM05D008206 ORTHO05D010320 4.0e-16 87.8 77 63.6
GSVIVG01011434001 Vitis vinifera HOM05D008206 ORTHO05D010320 6.8e-16 87.0 76 57.9
Gorai.011G097200 Gossypium raimondii HOM05D008206 ORTHO05D010320 1.2e-15 86.3 77 61.0
Manes.01G092200 Manihot esculenta HOM05D008206 ORTHO05D010320 1.5e-15 85.9 78 61.5
Prupe.3G266100 Prunus persica HOM05D008206 ORTHO05D010320 1.5e-15 85.9 76 57.9
Gohir.A11G070300 Gossypium hirsutum HOM05D008206 ORTHO05D010320 3.4e-15 84.7 76 55.3
Gohir.D11G074000 Gossypium hirsutum HOM05D008206 ORTHO05D010320 1.7e-14 82.4 76 55.3
Gorai.007G079400 Gossypium raimondii HOM05D008206 ORTHO05D010320 1.7e-14 82.4 76 55.3
Dinv33772 Davidia involucrata HOM05D008206 ORTHO05D010320 9.2e-13 76.6 74 54.1
Potri.004G122800 Populus trichocarpa HOM05D008206 ORTHO05D010320 2.0e-12 75.5 78 57.7
Sabra17G0074600 Salix brachista HOM05D008206 ORTHO05D010320 2.0e-12 75.5 79 57.0
FvH4_6g48260 Fragaria vesca HOM05D008206 ORTHO05D010320 3.5e-12 74.7 76 55.3
FAN02G1369 Fragaria x ananassa HOM05D008206 ORTHO05D010320 3.5e-12 74.7 76 55.3
FAN05G0177 Fragaria x ananassa HOM05D008206 ORTHO05D010320 3.5e-12 74.7 76 55.3
FAN05G4857 Fragaria x ananassa HOM05D008206 ORTHO05D010320 3.5e-12 74.7 76 55.3
FAN14G5696 Fragaria x ananassa HOM05D008206 ORTHO05D010320 4.6e-12 74.3 76 55.3
RcHm_v2.0_Chr2g0167761 Rosa chinensis HOM05D008206 ORTHO05D010320 7.8e-12 73.6 76 52.6
FAN09G1639 Fragaria x ananassa HOM05D008206 ORTHO05D010320 1.0e-11 73.2 76 53.9
Gorai.008G139600 Gossypium raimondii HOM05D008206 ORTHO05D010320 1.0e-11 73.2 77 51.9
Potri.017G084700 Populus trichocarpa HOM05D008206 ORTHO05D010320 1.7e-11 72.4 80 52.5
Actinidia26223 Actinidia chinensis HOM05D008206 ORTHO05D010320 2.9e-11 71.6 77 57.1
Psat3g197800 Pisum sativum HOM05D008206 ORTHO05D010320 5.0e-11 70.9 76 51.3
TPR.G28906 Trifolium pratense HOM05D008206 ORTHO05D010320 5.0e-11 70.9 76 51.3
CANSAT64G2007 Cannabis sativa HOM05D008206 ORTHO05D010320 4.3e-10 67.8 83 47.0
COL.COLO4_10319 Corchorus olitorius HOM05D008206 ORTHO05D010320 5.6e-10 67.4 47 63.8
arahy.Tifrunner.gnm1.ann1.BDSN0J Arachis hypogaea HOM05D008206 ORTHO05D010320 7.3e-10 67.0 77 54.5
Lalb_Chr04g0258591 Lupinus albus HOM05D008206 ORTHO05D010320 9.5e-10 66.6 71 50.7
CSS0033569 Camellia sinensis var. sinensis HOM05D008206 ORTHO05D010320 1.2e-09 66.2 80 53.8
Medtr7g010980 Medicago truncatula HOM05D008206 ORTHO05D010320 1.6e-09 65.9 79 46.8
CSS0025041 Camellia sinensis var. sinensis HOM05D008206 ORTHO05D010320 2.8e-09 65.1 80 53.8
CsaV3_3G041320 Cucumis sativus L. HOM05D008206 ORTHO05D010320 2.8e-09 65.1 83 50.6
Gohir.D12G128666 Gossypium hirsutum HOM05D008206 ORTHO05D010320 3.6e-09 64.7 75 48.0
Gohir.D11G074200 Gossypium hirsutum HOM05D008206 ORTHO05D010320 4.7e-09 64.3 75 48.0
Nn4g23199 Nelumbo nucifera HOM05D008206 ORTHO05D010320 4.7e-09 64.3 75 46.7
ClCG10G015200 Citrullus lanatus HOM05D008206 ORTHO05D010320 8.0e-09 63.5 81 49.4
Actinidia17551 Actinidia chinensis HOM05D008206 ORTHO05D010320 1.4e-08 62.8 81 50.6
Nn3g17269 Nelumbo nucifera HOM05D008206 ORTHO05D010320 1.4e-08 62.8 78 47.4
Sed0002436 Sechium edule HOM05D008206 ORTHO05D010320 1.4e-08 62.8 72 52.8
Migut.K01319 Erythranthe guttata HOM05D008206 ORTHO05D010320 3.1e-08 61.6 74 47.3
Eucgr.J01355 Eucalyptus grandis HOM05D008206 ORTHO05D010320 5.2e-08 60.8 68 47.1
CsaV3_5G038110 Cucumis sativus L. HOM05D041357 ORTHO05D010320 1.2e-07 59.7 77 44.2
Phvul.008G037100 Phaseolus vulgaris HOM05D008206 ORTHO05D010320 1.5e-07 59.3 73 49.3
Hund13203 Selenicereus undatus HOM05D031025 ORTHO05D026498 4.4e-07 57.8 78 46.2
Oeu019466.1 Olea europaea HOM05D015451 ORTHO05D018043 7.5e-07 57.0 75 48.0
THA.LOC104822354 Tarenaya hassleriana HOM05D011054 ORTHO05D013197 7.5e-07 57.0 76 43.4
Aqoxy3G03425 Aquilegia oxysepala HOM05D008206 ORTHO05D010320 9.8e-07 56.6 87 42.5
CDE02G3745 Ceratophyllum demersum HOM05D002107 ORTHO05D002067 1.7e-06 55.8 80 46.2
Gohir.A11G070100 Gossypium hirsutum HOM05D008206 ORTHO05D010320 2.2e-06 55.5 59 50.8
Sc10g0003520 Simmondsia chinensis HOM05D008206 ORTHO05D010320 2.9e-06 55.1 77 46.8
Glyma.09G236902 Glycine max HOM05D008206 ORTHO05D010320 3.7e-06 54.7 70 44.3
Glyma.18G260600 Glycine max HOM05D008206 ORTHO05D010320 3.7e-06 54.7 70 45.7
Lj1g0016071 Lotus japonicus HOM05D008206 ORTHO05D010320 4.9e-06 54.3 62 46.8


User provided reference genes

Program Settings