Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007544 Carpinus fangiana HOM05D000010 ORTHO05D000865 2.7e-129 465.3 230 100.0
Haze_14543 Corylus avellana HOM05D000010 ORTHO05D000865 5.3e-101 371.3 233 88.4
QL02p081701 Quercus lobata HOM05D000010 ORTHO05D000865 1.5e-74 283.5 236 70.8
CiPaw.03G027500 Carya illinoinensis HOM05D000010 ORTHO05D000865 1.1e-69 267.3 236 67.4
TAR622G1037 Trochodendron aralioides HOM05D000010 ORTHO05D000865 1.0e-59 234.2 237 59.1
Thecc.04G080700 Theobroma cacao HOM05D000010 ORTHO05D000865 1.9e-58 229.9 240 59.2
Dinv33754 Davidia involucrata HOM05D000010 ORTHO05D000865 5.6e-58 228.4 240 60.0
Manes.01G090300 Manihot esculenta HOM05D000010 ORTHO05D000865 2.8e-57 226.1 239 59.4
Duzib187G0985 Durio zibethinus HOM05D000010 ORTHO05D000865 4.0e-56 222.2 235 57.4
Nn4g23151 Nelumbo nucifera HOM05D000010 ORTHO05D000865 4.0e-56 222.2 244 55.7
Ciclev10011891m.g Citrus clementina HOM05D000010 ORTHO05D000865 6.8e-56 221.5 235 57.4
Potri.017G082000 Populus trichocarpa HOM05D000010 ORTHO05D000865 1.5e-55 220.3 236 59.3
Duzib264G1147 Durio zibethinus HOM05D000010 ORTHO05D000865 3.4e-55 219.2 240 60.0
CSS0002889 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000865 9.8e-55 217.6 240 57.5
CiPaw.04G017700 Carya illinoinensis HOM05D000010 ORTHO05D000865 8.3e-54 214.5 234 57.3
Potri.004G126901 Populus trichocarpa HOM05D000010 ORTHO05D000865 4.6e-52 208.8 240 58.3
TWI34G0514 Tripterygium wilfordii HOM05D000010 ORTHO05D000865 6.6e-51 204.9 242 57.0
Manes.02G045800 Manihot esculenta HOM05D000010 ORTHO05D000865 8.6e-51 204.5 239 55.6
Hma1.2p1_0449F.1_g155470 Hydrangea macrophylla HOM05D000010 ORTHO05D000865 2.1e-49 199.9 236 55.1
Aqoxy3G03372 Aquilegia oxysepala HOM05D000010 ORTHO05D000865 2.8e-49 199.5 241 51.5
Duzib147G0679 Durio zibethinus HOM05D000010 ORTHO05D000865 4.4e-47 192.2 240 54.2
Atru.chr8.147 Acer truncatum HOM05D000010 ORTHO05D000865 1.7e-46 190.3 243 53.9
Nn3g17225 Nelumbo nucifera HOM05D000010 ORTHO05D000865 2.2e-46 189.9 253 53.4
Eucgr.I01940 Eucalyptus grandis HOM05D000010 ORTHO05D000865 4.9e-46 188.7 240 52.1
Prupe.3G268400 Prunus persica HOM05D000010 ORTHO05D000865 8.3e-46 188.0 249 53.0
TAR371G1214 Trochodendron aralioides HOM05D000010 ORTHO05D000865 8.3e-46 188.0 241 51.9
PSO063G1973 Papaver somniferum HOM05D000010 ORTHO05D000865 2.4e-45 186.4 238 50.8
MBI05_g08287_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000865 2.1e-44 183.3 236 50.8
MD09G1050400 Malus domestica HOM05D000010 ORTHO05D000865 7.8e-44 181.4 235 54.0
PSO478G0873 Papaver somniferum HOM05D000010 ORTHO05D000865 3.0e-43 179.5 239 47.7
PSO832G0479 Papaver somniferum HOM05D000010 ORTHO05D000865 1.5e-42 177.2 241 46.1
TWI32G0599 Tripterygium wilfordii HOM05D000010 ORTHO05D000865 1.5e-42 177.2 243 54.7
TWI32G0957 Tripterygium wilfordii HOM05D000010 ORTHO05D000865 1.5e-42 177.2 243 54.7
CSS0037308 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000865 3.6e-41 172.6 237 48.1
PSO017G1075 Papaver somniferum HOM05D000010 ORTHO05D000865 4.7e-41 172.2 239 47.3
Gorai.006G017700 Gossypium raimondii HOM05D000010 ORTHO05D000865 1.8e-40 170.2 236 51.3
Dinv06542 Davidia involucrata HOM05D000010 ORTHO05D000865 2.3e-40 169.9 248 52.0
Gohir.D09G015500 Gossypium hirsutum HOM05D000010 ORTHO05D000865 2.3e-40 169.9 236 50.8
Sabra04G0088700 Salix brachista HOM05D000010 ORTHO05D000865 2.3e-40 169.9 241 50.6
Sabra04G0088800 Salix brachista HOM05D000010 ORTHO05D000865 5.2e-40 168.7 241 50.6
TWI60G0617 Tripterygium wilfordii HOM05D000010 ORTHO05D000865 4.4e-39 165.6 241 49.4
COL.COLO4_33293 Corchorus olitorius HOM05D000010 ORTHO05D000865 5.8e-39 165.2 240 48.8
Gohir.A09G016900 Gossypium hirsutum HOM05D000010 ORTHO05D000865 7.5e-39 164.9 236 50.8
QL03p063052 Quercus lobata HOM05D000010 ORTHO05D000865 9.9e-39 164.5 239 47.7
QL03p064288 Quercus lobata HOM05D000010 ORTHO05D000865 1.9e-37 160.2 239 46.9
MBI18_g09613_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000865 2.4e-37 159.8 240 43.8
Cc07_g03320 Coffea canephora HOM05D000010 ORTHO05D000865 3.2e-37 159.5 240 45.8
Haze_12016 Corylus avellana HOM05D000010 ORTHO05D000865 3.2e-37 159.5 243 45.7
MBI02_g39061_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000865 4.1e-37 159.1 242 45.0
Rhsim08G0068900 Rhododendron simsii HOM05D000010 ORTHO05D000865 4.1e-37 159.1 237 49.8
MD17G1050600 Malus domestica HOM05D000010 ORTHO05D000865 2.7e-36 156.4 239 50.6
DCAR_011133 Daucus carota HOM05D000010 ORTHO05D000865 4.6e-36 155.6 231 47.2
AUR62034400 Chenopodium quinoa HOM05D000010 ORTHO05D000865 6.0e-36 155.2 235 44.7
Sopen02g032660 Solanum pennellii HOM05D000010 ORTHO05D000865 1.7e-35 153.7 241 46.1
AUR62039815 Chenopodium quinoa HOM05D000010 ORTHO05D000865 6.6e-35 151.8 235 43.8
PGSC0003DMG400001323 Solanum tuberosum HOM05D000010 ORTHO05D000865 4.3e-34 149.1 238 44.1
GSVIVG01011420001 Vitis vinifera HOM05D000010 ORTHO05D000865 2.8e-33 146.4 241 46.1
GSVIVG01019993001 Vitis vinifera HOM05D000010 ORTHO05D000865 4.7e-33 145.6 238 43.3
TPR.G21405 Trifolium pratense HOM05D000010 ORTHO05D000865 1.1e-32 144.4 243 43.2
PGR142G3465 Punica granatum HOM05D000010 ORTHO05D000865 1.4e-32 144.1 239 44.8
FAN02G1282 Fragaria x ananassa HOM05D000010 ORTHO05D000865 4.0e-32 142.5 235 44.3
Actinidia06088 Actinidia chinensis HOM05D000010 ORTHO05D000865 5.2e-32 142.1 225 47.6
EL10Ac2g02976 Beta vulgaris HOM05D000010 ORTHO05D000865 1.2e-31 141.0 239 41.8
Lj7A395T76 Lonicera japonica HOM05D000010 ORTHO05D000865 2.6e-31 139.8 234 44.4
ATR0564G311 Amborella trichopoda HOM05D000010 ORTHO05D000865 9.9e-31 137.9 242 45.5
FAN05G4487 Fragaria x ananassa HOM05D000010 ORTHO05D000865 1.3e-30 137.5 233 43.3
FAN09G3379 Fragaria x ananassa HOM05D000010 ORTHO05D000865 1.7e-30 137.1 233 43.8
Duzib251G0763 Durio zibethinus HOM05D000010 ORTHO05D000865 2.2e-30 136.7 241 42.3
FAN14G3002 Fragaria x ananassa HOM05D000010 ORTHO05D000865 2.2e-30 136.7 233 43.8
CAN.G206.146 Capsicum annuum HOM05D000010 ORTHO05D000865 2.9e-30 136.3 240 42.9
Manes.05G101000 Manihot esculenta HOM05D000010 ORTHO05D000865 4.9e-30 135.6 243 40.3
Solyc02g087920.3 Solanum lycopersicum HOM05D000010 ORTHO05D000865 4.9e-30 135.6 239 44.4
Rhsim10G0039900 Rhododendron simsii HOM05D000010 ORTHO05D000865 6.4e-30 135.2 236 47.5
vmacro05698 Vaccinium macrocarpon HOM05D000010 ORTHO05D000865 8.4e-30 134.8 228 46.1
Medtr6g011860 Medicago truncatula HOM05D000010 ORTHO05D000865 1.1e-29 134.4 240 40.8
Oeu062113.1 Olea europaea HOM05D000010 ORTHO05D000865 1.1e-29 134.4 237 45.6
Hund15607 Selenicereus undatus HOM05D000010 ORTHO05D000865 1.4e-29 134.0 239 40.6
Thecc.02G346900 Theobroma cacao HOM05D000010 ORTHO05D000865 3.2e-29 132.9 246 40.7
Glyma.13G063300 Glycine max HOM05D000010 ORTHO05D000865 4.2e-29 132.5 239 43.5
Phvul.004G028300 Phaseolus vulgaris HOM05D000010 ORTHO05D000865 7.1e-29 131.7 236 41.5
vmacro18193 Vaccinium macrocarpon HOM05D000010 ORTHO05D000865 9.2e-29 131.3 228 46.1
Actinidia17546 Actinidia chinensis HOM05D000010 ORTHO05D000865 1.2e-28 131.0 212 46.2
Nitab4.5_0000564g0120 Nicotiana tabacum HOM05D000010 ORTHO05D000865 1.2e-28 131.0 240 44.6
FvH4_6g48740 Fragaria vesca HOM05D000010 ORTHO05D000865 2.1e-28 130.2 233 43.3
Nitab4.5_0006318g0070 Nicotiana tabacum HOM05D000010 ORTHO05D000865 2.1e-28 130.2 240 44.2
Actinidia31206 Actinidia chinensis HOM05D000010 ORTHO05D000865 3.5e-28 129.4 242 43.8
TAR629G2193 Trochodendron aralioides HOM05D000010 ORTHO05D000865 7.8e-28 128.3 196 44.9
VMungo0464G1574 Vigna mungo HOM05D000010 ORTHO05D000865 3.0e-27 126.3 236 40.7
Duzib268G0455 Durio zibethinus HOM05D000010 ORTHO05D000865 6.6e-27 125.2 240 40.0
CiPaw.05G135700 Carya illinoinensis HOM05D000010 ORTHO05D000865 8.7e-27 124.8 245 40.4
Ah.10g031560 Amaranthus hybridus HOM05D000010 ORTHO05D000865 1.5e-26 124.0 234 39.7
Manes.01G186100 Manihot esculenta HOM05D000010 ORTHO05D000865 1.5e-26 124.0 240 42.1
Glyma.19G021900 Glycine max HOM05D000010 ORTHO05D000865 3.3e-26 122.9 237 42.2
Lsat_1_v5_gn_2_89180 Lactuca sativa HOM05D000010 ORTHO05D000865 4.3e-26 122.5 233 37.8
Duzib248G0835 Durio zibethinus HOM05D000010 ORTHO05D000865 1.6e-25 120.6 243 41.6
Actinidia36014 Actinidia chinensis HOM05D000010 ORTHO05D000865 1.8e-24 117.1 197 45.7
Dinv34158 Davidia involucrata HOM05D000010 ORTHO05D009770 1.8e-24 117.1 181 49.7
Psat1g074400 Pisum sativum HOM05D000010 ORTHO05D000865 2.4e-24 116.7 236 36.4
CiPaw.06G084300 Carya illinoinensis HOM05D000010 ORTHO05D000865 4.0e-24 115.9 250 40.4
Lj2g0026112 Lotus japonicus HOM05D000010 ORTHO05D000865 9.0e-24 114.8 237 37.1
RcHm_v2.0_Chr2g0168651 Rosa chinensis HOM05D000010 ORTHO05D000865 1.2e-23 114.4 233 40.3
HPP92_011247 Vanilla planifolia HOM05D000010 ORTHO05D000865 7.6e-23 111.7 236 34.7
Lj2g0011362 Lotus japonicus HOM05D000010 ORTHO05D000865 3.8e-22 109.4 251 36.3
Phvul.002G085700 Phaseolus vulgaris HOM05D000010 ORTHO05D000865 4.9e-22 109.0 262 37.0
Cfa008986 Carpinus fangiana HOM05D000010 ORTHO05D000865 8.4e-22 108.2 227 40.5
Cc11_g13040 Coffea canephora HOM05D000010 ORTHO05D000865 1.1e-21 107.8 241 36.9
Oeu054881.1 Olea europaea HOM05D000010 ORTHO05D000865 9.3e-21 104.8 233 37.3
Ciclev10031623m.g Citrus clementina HOM05D000010 ORTHO05D000865 2.1e-20 103.6 256 36.7
Peaxi162Scf00129g00230 Petunia axillaris HOM05D000010 ORTHO05D000865 4.6e-20 102.4 221 40.7
VMungo0251G1249 Vigna mungo HOM05D000010 ORTHO05D000865 7.8e-20 101.7 225 36.9
Gohir.D04G049450 Gossypium hirsutum HOM05D000010 ORTHO05D000865 1.3e-19 100.9 172 40.1
Rhsim12G0132100 Rhododendron simsii HOM05D000010 ORTHO05D000865 1.3e-19 100.9 251 35.1
CSS0048387 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000865 2.3e-19 100.1 245 38.4
vmacro16343 Vaccinium macrocarpon HOM05D000010 ORTHO05D000865 8.7e-19 98.2 244 37.7
Gohir.D02G125500 Gossypium hirsutum HOM05D000010 ORTHO05D000865 1.9e-18 97.1 223 39.0
VMungo1215G0251 Vigna mungo HOM05D000010 ORTHO05D000865 2.5e-18 96.7 252 35.7
Gohir.A05G365450 Gossypium hirsutum HOM05D000010 ORTHO05D000865 3.3e-18 96.3 172 39.5
Phvul.002G171600 Phaseolus vulgaris HOM05D000010 ORTHO05D000865 3.3e-18 96.3 224 36.2
Phvul.L004146 Phaseolus vulgaris HOM05D000010 ORTHO05D000865 3.3e-18 96.3 224 36.2
Gohir.A03G100700 Gossypium hirsutum HOM05D000010 ORTHO05D000865 4.3e-18 95.9 223 39.0
Gorai.012G054800 Gossypium raimondii HOM05D000010 ORTHO05D000865 4.3e-18 95.9 172 39.5
HanXRQChr07g0199371 Helianthus annuus HOM05D000010 ORTHO05D000865 9.6e-18 94.7 229 33.2
Lj3C1037T14 Lonicera japonica HOM05D000010 ORTHO05D000865 9.6e-18 94.7 239 34.7
Lalb_Chr05g0220371 Lupinus albus HOM05D000010 ORTHO05D000865 1.6e-17 94.0 234 35.0
Peaxi162Scf00541g00010 Petunia axillaris HOM05D000010 ORTHO05D000865 4.8e-17 92.4 231 32.9
Gorai.005G141200 Gossypium raimondii HOM05D000010 ORTHO05D000865 6.2e-17 92.0 223 39.0
Glyma.18G119300 Glycine max HOM05D000010 ORTHO05D000865 1.1e-16 91.3 224 35.3
Lalb_Chr16g0385821 Lupinus albus HOM05D000010 ORTHO05D000865 1.8e-16 90.5 242 33.9
Oeu033359.1 Olea europaea HOM05D000010 ORTHO05D000865 1.8e-16 90.5 256 35.2
Medtr8g467490 Medicago truncatula HOM05D000010 ORTHO05D000865 3.1e-16 89.7 241 33.2
COL.COLO4_23009 Corchorus olitorius HOM05D000010 ORTHO05D000865 5.3e-16 89.0 272 33.8
Nitab4.5_0002635g0090 Nicotiana tabacum HOM05D000010 ORTHO05D000865 2.0e-15 87.0 225 33.3
Nitab4.5_0000141g0080 Nicotiana tabacum HOM05D000010 ORTHO05D000865 2.6e-15 86.7 226 33.6
Atru.chr11.1793 Acer truncatum HOM05D000010 ORTHO05D000865 5.8e-15 85.5 285 35.4
MD13G1072500 Malus domestica HOM05D000010 ORTHO05D000865 7.6e-15 85.1 286 33.6
Ca_07116_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000865 1.3e-14 84.3 245 33.5
Nitab4.5_0001503g0150 Nicotiana tabacum HOM05D000010 ORTHO05D000865 2.2e-14 83.6 244 34.4
Peaxi162Scf00911g00049 Petunia axillaris HOM05D000010 ORTHO05D000865 4.9e-14 82.4 233 33.0
Nitab4.5_0008470g0030 Nicotiana tabacum HOM05D000010 ORTHO05D000865 1.1e-13 81.3 239 34.7
Migut.H00918 Erythranthe guttata HOM05D000010 ORTHO05D000865 2.4e-13 80.1 199 36.2
Prupe.1G274300 Prunus persica HOM05D000010 ORTHO05D000865 2.4e-13 80.1 300 34.3
Gorai.013G085000 Gossypium raimondii HOM05D000010 ORTHO05D000865 4.2e-13 79.3 153 37.3
CAN.G58.50 Capsicum annuum HOM05D000010 ORTHO05D000865 5.4e-13 79.0 259 32.4
Glyma.08G301100 Glycine max HOM05D000010 ORTHO05D000865 1.2e-12 77.8 234 33.3
Gohir.D13G074400 Gossypium hirsutum HOM05D000010 ORTHO05D000865 2.1e-12 77.0 153 37.3
MD16G1073300 Malus domestica HOM05D000010 ORTHO05D000865 2.1e-12 77.0 286 30.8
Glyma.02G107000 Glycine max HOM05D000010 ORTHO05D000865 7.9e-12 75.1 265 32.8
Sc10g0003650 Simmondsia chinensis HOM05D000010 ORTHO05D000865 1.3e-11 74.3 235 30.2
TPR.G8672 Trifolium pratense HOM05D000010 ORTHO05D000865 1.3e-11 74.3 242 30.6
Psat4g134480 Pisum sativum HOM05D000010 ORTHO05D000865 1.8e-11 73.9 244 29.1
Glyma.01G046800 Glycine max HOM05D000010 ORTHO05D000865 2.3e-11 73.6 264 32.6
Medtr5g040420 Medicago truncatula HOM05D000010 ORTHO05D000865 3.0e-11 73.2 248 32.3
ECA238G2870 Erigeron canadensis HOM05D000010 ORTHO05D000865 3.9e-11 72.8 238 33.6
FAN17G0852 Fragaria x ananassa HOM05D000010 ORTHO05D000865 3.9e-11 72.8 282 33.7
Aqoxy3G00641 Aquilegia oxysepala HOM05D000010 ORTHO05D000865 1.1e-10 71.2 230 31.7
Hma1.2p1_0795F.1_g218780 Hydrangea macrophylla HOM05D000010 ORTHO05D000865 1.9e-10 70.5 46 69.6
FAN22G0938 Fragaria x ananassa HOM05D000010 ORTHO05D000865 2.5e-10 70.1 281 33.1
PGSC0003DMG400031266 Solanum tuberosum HOM05D000010 ORTHO05D000865 3.3e-10 69.7 259 32.4
Gohir.A13G074300 Gossypium hirsutum HOM05D000010 ORTHO05D000865 5.6e-10 68.9 86 46.5
SalBow1G4491 Salvia bowleyana HOM05D000010 ORTHO05D000865 5.6e-10 68.9 78 51.3
Nitab4.5_0008492g0060 Nicotiana tabacum HOM05D000029 ORTHO05D284970 9.6e-10 68.2 88 47.7
Cpa.g.sc128.20 Carica papaya HOM05D000010 ORTHO05D000865 6.2e-09 65.5 238 33.2
FvH4_4g31420 Fragaria vesca HOM05D000010 ORTHO05D000865 1.8e-08 63.9 273 30.8
Lalb_Chr21g0318821 Lupinus albus HOM05D000010 ORTHO05D237901 5.3e-08 62.4 229 28.4
Sopen05g003440 Solanum pennellii HOM05D000010 ORTHO05D000865 5.3e-08 62.4 248 30.6
FAN07G0802 Fragaria x ananassa HOM05D000010 ORTHO05D000865 9.0e-08 61.6 271 32.5
FAN12G1613 Fragaria x ananassa HOM05D000010 ORTHO05D000865 9.0e-08 61.6 273 30.4
Psat0s1951g0040 Pisum sativum HOM05D000010 ORTHO05D000865 9.0e-08 61.6 241 29.9
ECA232G3715 Erigeron canadensis HOM05D000010 ORTHO05D000865 1.2e-07 61.2 237 31.6
Solyc05g007550.3 Solanum lycopersicum HOM05D000010 ORTHO05D000865 2.0e-07 60.5 248 29.8
Migut.E00095 Erythranthe guttata HOM05D000010 ORTHO05D000865 2.6e-07 60.1 54 59.3
Nitab4.5_0009677g0010 Nicotiana tabacum HOM05D000029 ORTHO05D286784 3.4e-07 59.7 67 52.2
Sed0003859 Sechium edule HOM05D000010 ORTHO05D000865 3.4e-07 59.7 236 30.1
Sc04g0008170 Simmondsia chinensis HOM05D000010 ORTHO05D000865 5.8e-07 58.9 246 28.5
RcHm_v2.0_Chr4g0439901 Rosa chinensis HOM05D000010 ORTHO05D000865 8.4e-06 55.1 278 29.9


User provided reference genes

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