Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 7.7e-291 1003.0 495 100.0
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 3.5e-267 924.5 533 88.0
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 2.4e-244 848.6 494 84.4
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 4.3e-241 837.8 495 82.8
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.2e-227 793.1 495 79.4
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 3.5e-227 791.6 492 79.7
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 5.7e-225 784.3 493 77.9
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 2.8e-224 781.9 495 79.4
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 4.8e-224 781.2 494 79.4
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 8.2e-224 780.4 497 78.1
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 1.4e-223 779.6 493 78.3
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 5.3e-223 777.7 492 77.4
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 9.0e-223 776.9 497 78.5
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 1.2e-222 776.5 502 75.9
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 4.2e-220 768.1 493 77.3
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 9.3e-220 766.9 501 75.4
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 9.3e-220 766.9 495 76.4
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 1.2e-219 766.5 495 76.2
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 4.6e-219 764.6 495 76.2
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 1.0e-218 763.5 495 76.6
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 1.3e-218 763.1 501 76.8
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 1.8e-218 762.7 497 76.1
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 3.0e-218 761.9 495 74.9
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 5.1e-218 761.1 496 77.2
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 1.1e-217 760.0 495 77.0
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 3.3e-217 758.4 497 75.3
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 7.4e-217 757.3 451 80.0
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 7.4e-217 757.3 497 75.5
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 9.7e-217 756.9 497 75.9
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 1.3e-216 756.5 496 75.6
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 2.8e-216 755.4 499 75.6
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 2.4e-215 752.3 497 75.1
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 3.1e-215 751.9 458 79.0
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 2.6e-214 748.8 501 75.6
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 1.7e-213 746.1 526 71.5
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.8e-213 745.0 496 75.4
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 1.1e-212 743.4 431 81.7
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 1.4e-212 743.0 460 78.9
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 1.9e-212 742.7 471 76.4
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 2.5e-212 742.3 431 81.2
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 2.5e-212 742.3 469 78.0
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 3.2e-212 741.9 496 74.0
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 7.2e-212 740.7 454 78.4
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 9.4e-212 740.3 481 75.5
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 1.0e-210 736.9 452 78.8
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 1.0e-210 736.9 425 80.9
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 2.3e-210 735.7 499 73.5
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 5.1e-210 734.6 424 80.4
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.5e-209 733.0 500 74.6
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 1.5e-209 733.0 424 82.1
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 1.7e-208 729.6 448 77.0
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 1.7e-208 729.6 425 80.2
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 2.2e-208 729.2 482 74.7
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 2.8e-208 728.8 422 81.0
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 3.7e-208 728.4 445 77.3
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 4.8e-208 728.0 493 73.0
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 8.2e-208 727.2 495 72.3
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 1.1e-207 726.9 495 72.7
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 1.4e-207 726.5 494 72.5
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 2.4e-207 725.7 425 80.9
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 4.1e-207 724.9 495 72.7
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 4.1e-207 724.9 425 81.4
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 5.3e-207 724.5 497 72.8
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 2.6e-206 722.2 495 72.5
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 5.9e-206 721.1 503 72.0
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 7.7e-206 720.7 495 71.9
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 7.7e-206 720.7 453 76.2
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 1.3e-205 719.9 469 75.9
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.7e-205 719.5 461 74.8
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 2.2e-205 719.2 494 71.9
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 2.2e-205 719.2 494 71.9
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 2.9e-205 718.8 496 70.8
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 5.0e-205 718.0 494 71.7
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 5.0e-205 718.0 494 71.7
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 6.5e-205 717.6 494 70.9
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 8.5e-205 717.2 425 80.0
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 1.4e-204 716.5 466 74.5
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 1.2e-203 713.4 428 79.0
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 2.1e-203 712.6 424 79.5
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 3.6e-203 711.8 438 77.9
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 3.6e-203 711.8 436 78.7
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 1.4e-202 709.9 497 70.4
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 1.1e-199 700.3 445 76.4
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 7.0e-199 697.6 444 77.3
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 1.0e-197 693.7 437 76.2
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.0e-197 693.7 457 75.7
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 5.7e-193 677.9 405 79.5
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 1.7e-192 676.4 401 79.3
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.8e-192 675.6 463 71.7
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 4.8e-192 674.9 466 71.0
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 4.1e-191 671.8 552 64.5
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.5e-190 668.7 378 84.4
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 9.4e-188 660.6 460 73.5
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 2.3e-186 656.0 424 73.8
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 5.9e-182 641.3 378 79.6
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 1.1e-180 637.1 498 68.1
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.4e-178 630.2 411 73.7
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 3.5e-174 615.5 435 70.6
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 5.9e-174 614.8 442 68.3
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 5.0e-173 611.7 459 65.4
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 2.8e-171 605.9 394 73.6
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 1.8e-170 603.2 483 64.6
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 4.0e-170 602.1 341 83.9
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 5.7e-169 598.2 390 73.6
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.0e-166 589.7 378 75.1
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 1.7e-165 586.6 515 57.1
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 1.3e-160 570.5 504 58.7
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 9.2e-159 564.3 402 68.9
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 2.3e-154 549.7 346 77.2
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 1.3e-152 543.9 461 59.7
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 1.0e-149 534.3 325 80.6
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 1.6e-142 510.4 451 56.1
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 5.6e-124 448.7 256 80.9
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 2.2e-120 436.8 297 71.0
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 2.2e-120 436.8 297 71.0
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 5.6e-116 422.2 348 62.1
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 4.8e-115 419.1 391 55.0
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 1.3e-109 401.0 295 66.8
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 2.6e-105 386.7 270 70.7
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 1.0e-104 384.8 264 71.2
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 1.7e-104 384.0 285 66.0
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 2.5e-103 380.2 294 65.6
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 8.0e-86 322.0 386 44.6
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.8e-85 320.9 208 74.0
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 8.2e-83 312.0 247 69.6
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 1.8e-77 294.3 335 44.8
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 8.8e-69 265.4 250 55.2
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 2.4e-66 257.3 580 31.6
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 5.8e-52 209.5 460 32.6
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 3.3e-47 193.7 109 83.5
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 1.9e-42 177.9 113 76.1
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.2e-41 175.3 112 73.2
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 3.0e-32 144.1 82 82.9
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 5.2e-29 133.3 82 72.0
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 5.6e-23 113.2 74 74.3
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 9.9e-20 102.4 58 70.7
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 2.2e-19 101.3 69 68.1
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 2.2e-19 101.3 69 68.1
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 2.4e-18 97.8 92 54.3
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 3.2e-18 97.4 69 66.7
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 4.2e-18 97.1 68 67.6
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 4.2e-18 97.1 69 66.7
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 9.3e-18 95.9 96 52.1
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 1.2e-17 95.5 95 53.7
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 2.7e-17 94.4 69 65.2
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 3.5e-17 94.0 68 66.2
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 4.6e-17 93.6 69 63.8
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 7.8e-17 92.8 53 75.5
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.6e-14 84.0 69 63.8
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 1.8e-13 81.6 64 67.2
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 1.3e-11 75.5 87 48.3
Oeu056605.1 Olea europaea HOM05D001875 ORTHO05D002019 1.6e-09 68.6 60 61.7
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 3.9e-08 63.9 52 65.4
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 8.7e-08 62.8 41 73.2


User provided reference genes

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