Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 2.1e-120 435.6 211 100.0
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 5.2e-95 351.3 208 80.3
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 1.1e-92 343.6 210 77.1
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 1.7e-90 336.3 210 74.8
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 1.9e-89 332.8 211 75.4
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 4.0e-87 325.1 211 73.5
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 2.0e-86 322.8 202 74.3
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 9.9e-86 320.5 195 76.4
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 1.7e-85 319.7 212 72.2
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 2.2e-85 319.3 202 74.3
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 4.9e-85 318.2 208 73.1
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 3.2e-84 315.5 191 74.9
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 7.1e-84 314.3 199 75.4
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 2.1e-83 312.8 202 73.3
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 2.1e-83 312.8 202 73.3
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 4.6e-83 311.6 207 71.5
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 7.8e-83 310.8 202 74.3
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.7e-82 309.7 202 74.3
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 1.7e-82 309.7 213 70.0
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 1.7e-82 309.7 200 72.0
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 3.0e-82 308.9 212 68.9
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.9e-82 308.5 203 72.4
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 3.9e-82 308.5 191 76.4
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 8.6e-82 307.4 190 74.7
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 1.5e-81 306.6 209 68.4
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 3.3e-81 305.4 198 70.7
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 3.3e-81 305.4 210 70.5
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 3.3e-81 305.4 211 68.7
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 1.2e-80 303.5 203 71.4
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 1.2e-80 303.5 203 71.4
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 1.6e-80 303.1 199 72.9
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 2.8e-80 302.4 194 72.2
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 2.8e-80 302.4 203 72.4
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 2.8e-80 302.4 167 82.0
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 2.8e-80 302.4 183 77.0
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.6e-80 302.0 203 71.4
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 8.1e-80 300.8 194 71.1
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 1.1e-79 300.4 178 78.1
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 1.8e-79 299.7 203 70.9
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.8e-79 299.7 203 70.9
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 3.1e-79 298.9 198 73.7
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 4.0e-79 298.5 190 73.2
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 5.2e-79 298.1 197 73.6
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 8.9e-79 297.4 193 73.1
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 1.5e-78 296.6 218 67.9
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 1.5e-78 296.6 218 67.9
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 1.5e-78 296.6 188 72.9
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 4.4e-78 295.0 211 67.3
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 5.8e-78 294.7 188 71.8
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 5.8e-78 294.7 196 71.4
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 5.8e-78 294.7 194 69.6
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 5.8e-78 294.7 206 66.5
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 5.8e-78 294.7 208 67.3
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 7.6e-78 294.3 206 68.9
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 9.9e-78 293.9 203 69.0
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 9.9e-78 293.9 204 67.6
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 9.9e-78 293.9 197 69.5
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 1.3e-77 293.5 174 77.0
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 6.4e-77 291.2 194 67.5
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 1.1e-76 290.4 169 77.5
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.4e-76 290.0 204 68.1
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 1.9e-76 289.7 194 68.0
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 2.1e-75 286.2 197 67.0
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 2.7e-75 285.8 201 68.2
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 3.5e-75 285.4 204 68.6
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 6.0e-75 284.6 193 69.4
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 1.3e-74 283.5 137 100.0
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 3.0e-74 282.3 165 80.6
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 3.9e-74 282.0 205 66.8
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 5.1e-74 281.6 191 70.7
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 5.1e-74 281.6 198 68.7
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 5.1e-74 281.6 197 67.0
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 6.6e-74 281.2 197 67.5
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 6.6e-74 281.2 171 73.7
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 6.6e-74 281.2 196 67.9
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 6.6e-74 281.2 189 69.3
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 8.7e-74 280.8 190 70.0
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 1.5e-73 280.0 197 67.5
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.5e-73 280.0 190 66.8
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 2.5e-73 279.3 180 68.9
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 4.3e-73 278.5 190 66.3
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 9.6e-73 277.3 182 68.1
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 1.3e-72 276.9 171 72.5
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 1.6e-72 276.6 195 67.2
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.6e-72 276.6 174 70.1
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 1.8e-71 273.1 201 66.2
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 5.3e-71 271.6 194 67.5
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 6.9e-71 271.2 194 66.5
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 6.9e-71 271.2 204 64.2
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 9.0e-71 270.8 201 63.7
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 1.2e-70 270.4 210 62.9
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.5e-70 270.0 189 66.7
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.0e-70 269.6 189 66.1
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 2.0e-70 269.6 190 64.7
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 2.6e-70 269.2 188 66.0
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 5.8e-70 268.1 186 66.7
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 9.9e-70 267.3 189 67.7
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 9.9e-70 267.3 193 63.2
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 9.9e-70 267.3 200 63.5
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 2.2e-69 266.2 217 61.3
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 6.4e-69 264.6 188 66.0
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 1.4e-68 263.5 187 66.8
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 2.4e-68 262.7 183 67.2
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 5.4e-68 261.5 180 67.2
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 3.5e-67 258.8 198 61.6
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 2.3e-66 256.1 205 61.0
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 3.0e-66 255.8 205 61.5
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 1.9e-65 253.1 205 59.5
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 4.8e-64 248.4 311 46.6
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 1.1e-63 247.3 205 58.0
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 1.4e-63 246.9 145 74.5
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 1.4e-63 246.9 178 64.6
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 1.5e-62 243.4 197 59.9
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 1.5e-62 243.4 197 59.9
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 2.6e-62 242.7 197 60.4
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 2.6e-62 242.7 152 73.7
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 4.5e-62 241.9 197 59.9
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 9.6e-57 224.2 158 70.9
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 4.8e-56 221.9 186 58.6
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 1.1e-55 220.7 128 77.3
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 1.0e-53 214.2 186 56.5
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 5.5e-52 208.4 168 63.1
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 9.3e-52 207.6 159 65.4
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 1.9e-49 199.9 176 51.1
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 2.5e-44 183.0 173 50.9
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 4.8e-40 168.7 167 49.1
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 1.1e-36 157.5 169 50.3
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 2.3e-34 149.8 169 46.2
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 2.3e-34 149.8 172 41.9
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 7.4e-33 144.8 154 46.8
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 7.4e-33 144.8 179 43.0
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 3.8e-29 132.5 77 74.0
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 1.2e-27 127.5 189 34.4
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 9.7e-25 117.9 166 39.2
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 8.0e-19 98.2 71 56.3
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 5.9e-14 82.0 67 55.2
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 2.9e-13 79.7 71 59.2
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 6.5e-13 78.6 46 76.1
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 6.1e-11 72.0 61 59.0
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 2.0e-09 67.0 166 29.5


User provided reference genes

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