Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007380 Carpinus fangiana HOM05D007358 ORTHO05D009117 6.8e-42 176.0 477 100.0
Haze_14729 Corylus avellana HOM05D007358 ORTHO05D009117 3.0e-37 160.6 79 97.5
CiPaw.03G042400 Carya illinoinensis HOM05D007358 ORTHO05D009117 7.8e-30 136.0 79 81.0
CANSAT64G1792 Cannabis sativa HOM05D007358 ORTHO05D009117 5.6e-28 129.8 79 73.4
QL02p074974 Quercus lobata HOM05D007358 ORTHO05D009117 5.6e-28 129.8 80 80.0
Dinv33449 Davidia involucrata HOM05D007358 ORTHO05D009117 8.1e-27 125.9 79 73.4
Prupe.3G290200 Prunus persica HOM05D007358 ORTHO05D009117 4.0e-26 123.6 79 68.4
RcHm_v2.0_Chr2g0173011 Rosa chinensis HOM05D007358 ORTHO05D009117 6.8e-26 122.9 81 70.4
QL06p022929 Quercus lobata HOM05D007358 ORTHO05D009117 3.4e-25 120.6 71 81.7
TWI12G0702 Tripterygium wilfordii HOM05D007358 ORTHO05D009117 4.4e-25 120.2 79 65.8
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 5.8e-25 119.8 80 71.2
GSVIVG01008360001 Vitis vinifera HOM05D007358 ORTHO05D009117 2.2e-24 117.9 79 64.6
QL02p075081 Quercus lobata HOM05D007358 ORTHO05D009117 3.7e-24 117.1 71 80.3
FAN04G0278 Fragaria x ananassa HOM05D007358 ORTHO05D009117 4.9e-24 116.7 81 65.4
FAN04G1709 Fragaria x ananassa HOM05D007358 ORTHO05D009117 4.9e-24 116.7 81 65.4
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 1.9e-23 114.8 79 64.6
Atru.BG.30.p Acer truncatum HOM05D007358 ORTHO05D009117 3.2e-23 114.0 79 67.1
Ciclev10018361m.g Citrus clementina HOM05D007358 ORTHO05D009117 4.1e-23 113.6 79 63.3
FvH4_5g31860 Fragaria vesca HOM05D007358 ORTHO05D009117 5.4e-23 113.2 81 65.4
Potri.017G071600 Populus trichocarpa HOM05D007358 ORTHO05D009117 2.1e-22 111.3 79 63.3
Manes.17G021400 Manihot esculenta HOM05D007358 ORTHO05D009117 2.7e-22 110.9 79 64.6
Sed0015079 Sechium edule HOM05D007358 ORTHO05D009117 2.7e-22 110.9 79 59.5
CsaV3_5G027190 Cucumis sativus L. HOM05D007358 ORTHO05D009117 4.6e-22 110.2 79 60.8
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 1.0e-21 109.0 79 63.3
Sabra17G0060800 Salix brachista HOM05D007358 ORTHO05D009117 1.0e-21 109.0 79 62.0
Hma1.2p1_0013F.1_g008830 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 1.3e-21 108.6 79 65.8
Hma1.2p1_0013F.1_g008840 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 1.3e-21 108.6 79 65.8
CSS0000420 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 1.7e-21 108.2 79 62.0
Eucgr.I01754 Eucalyptus grandis HOM05D007358 ORTHO05D009117 1.7e-21 108.2 79 63.3
CSS0010405 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 2.3e-21 107.8 79 60.8
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 1.1e-20 105.5 79 58.2
Ca_04155_v3 Cicer arietinum L. HOM05D007358 ORTHO05D009117 1.1e-20 105.5 79 60.8
Cpa.g.sc108.57 Carica papaya HOM05D007358 ORTHO05D009117 1.5e-20 105.1 79 59.5
Thecc.04G015800 Theobroma cacao HOM05D007358 ORTHO05D009117 4.3e-20 103.6 77 64.9
Cc09_g03920 Coffea canephora HOM05D007358 ORTHO05D009117 7.3e-20 102.8 79 57.0
Glyma.05G004200 Glycine max HOM05D007358 ORTHO05D009117 9.5e-20 102.4 83 56.6
VMungo0464G1987 Vigna mungo HOM05D007358 ORTHO05D009117 9.5e-20 102.4 83 55.4
AUR62023937 Chenopodium quinoa HOM05D007358 ORTHO05D009117 1.2e-19 102.1 79 60.8
Gohir.D11G070700 Gossypium hirsutum HOM05D007358 ORTHO05D009117 1.2e-19 102.1 77 62.3
Gorai.007G075800 Gossypium raimondii HOM05D007358 ORTHO05D009117 1.2e-19 102.1 77 62.3
Lj2C1075G10 Lonicera japonica HOM05D007358 ORTHO05D009117 1.2e-19 102.1 79 58.2
Nitab4.5_0000080g0200 Nicotiana tabacum HOM05D007358 ORTHO05D009117 1.2e-19 102.1 79 60.8
Sc03g0011070 Simmondsia chinensis HOM05D007358 ORTHO05D009117 1.2e-19 102.1 74 64.9
Nitab4.5_0004652g0010 Nicotiana tabacum HOM05D007358 ORTHO05D009117 1.6e-19 101.7 79 60.8
PGR142G1723 Punica granatum HOM05D007358 ORTHO05D009117 3.6e-19 100.5 78 60.3
Sopen03g003350 Solanum pennellii HOM05D007358 ORTHO05D009117 4.7e-19 100.1 79 60.8
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 6.2e-19 99.8 83 54.2
Gohir.A11G066500 Gossypium hirsutum HOM05D007358 ORTHO05D009117 8.1e-19 99.4 76 61.8
PGSC0003DMG400009102 Solanum tuberosum HOM05D007358 ORTHO05D009117 8.1e-19 99.4 79 60.8
Actinidia06003 Actinidia chinensis HOM05D007358 ORTHO05D009117 1.1e-18 99.0 71 63.4
Solyc03g007390.4 Solanum lycopersicum HOM05D007358 ORTHO05D009117 1.1e-18 99.0 79 59.5
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 1.4e-18 98.6 80 58.8
SGA_v2.0_scaffold122G33180 Striga asiatica HOM05D007358 ORTHO05D009117 1.8e-18 98.2 83 53.0
CSS0022172 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 2.4e-18 97.8 74 59.5
vmacro05457 Vaccinium macrocarpon HOM05D007358 ORTHO05D009117 2.4e-18 97.8 79 57.0
Nn2g12649 Nelumbo nucifera HOM05D007358 ORTHO05D009117 3.1e-18 97.4 79 55.7
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 4.0e-18 97.1 79 54.4
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 4.0e-18 97.1 79 54.4
HanXRQChr17g0537401 Helianthus annuus HOM05D007358 ORTHO05D009117 4.0e-18 97.1 78 53.8
EL10Ac9g21083 Beta vulgaris HOM05D007358 ORTHO05D009117 5.2e-18 96.7 71 62.0
CAN.G108.28 Capsicum annuum HOM05D007358 ORTHO05D009117 5.2e-18 96.7 80 61.2
Lalb_Chr24g0394951 Lupinus albus HOM05D007358 ORTHO05D009117 5.2e-18 96.7 79 57.0
MBI17_g07976_MAGBIO Magnolia biondii HOM05D007358 ORTHO05D009117 5.2e-18 96.7 79 59.5
THA.LOC104805375 Tarenaya hassleriana HOM05D007358 ORTHO05D009117 6.8e-18 96.3 79 49.4
Ah.01g004590 Amaranthus hybridus HOM05D007358 ORTHO05D009117 8.9e-18 95.9 74 59.5
Phvul.003G017200 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 8.9e-18 95.9 83 51.8
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.5e-17 95.1 83 50.6
Phvul.004G009641 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.0e-17 94.7 83 50.6
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.0e-17 94.7 83 50.6
SalBow6G1669 Salvia bowleyana HOM05D007358 ORTHO05D009117 2.0e-17 94.7 81 51.9
Migut.F01873 Erythranthe guttata HOM05D007358 ORTHO05D009117 3.4e-17 94.0 83 50.6
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 4.4e-17 93.6 80 55.0
Hund17802 Selenicereus undatus HOM05D007358 ORTHO05D009117 4.4e-17 93.6 74 62.2
MSTRG.8212 Avicennia marina HOM05D007358 ORTHO05D009117 7.6e-17 92.8 81 51.9
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 7.6e-17 92.8 79 55.7
Lsat_1_v5_gn_3_20581 Lactuca sativa HOM05D007358 ORTHO05D009117 7.6e-17 92.8 76 52.6
Lj2g0013463 Lotus japonicus HOM05D007358 ORTHO05D009117 7.6e-17 92.8 81 51.9
Oeu037939.3 Olea europaea HOM05D007358 ORTHO05D009117 7.6e-17 92.8 81 53.1
BcaB06g27500 Brassica carinata HOM05D007358 ORTHO05D009117 1.3e-16 92.0 78 53.8
SHI16405 Sapria himalayana HOM05D007358 ORTHO05D009117 1.3e-16 92.0 80 55.0
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 2.2e-16 91.3 79 54.4
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.2e-16 91.3 83 49.4
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 2.2e-16 91.3 79 53.2
CARHR261620 Cardamine hirsuta HOM05D007358 ORTHO05D009117 8.4e-16 89.4 79 45.6
Rhsim11G0131500 Rhododendron simsii HOM05D007358 ORTHO05D009117 8.4e-16 89.4 72 56.9
Aa31LG9G1210 Aethionema arabicum HOM05D007358 ORTHO05D009117 2.4e-15 87.8 79 48.1
DCAR_000707 Daucus carota HOM05D007358 ORTHO05D009117 2.4e-15 87.8 82 51.2
Peaxi162Scf00566g00064 Petunia axillaris HOM05D007358 ORTHO05D009117 3.5e-14 84.0 59 64.4
Sp7g01520 Schrenkiella parvula HOM05D007358 ORTHO05D009117 3.5e-14 84.0 80 48.8
AL7G49460 Arabidopsis lyrata HOM05D007358 ORTHO05D009117 1.3e-13 82.0 76 48.7
AT5G40400 Arabidopsis thaliana HOM05D007358 ORTHO05D009117 2.3e-13 81.3 76 50.0
Thhalv10027688m.g Eutrema salsugineum HOM05D007358 ORTHO05D009117 2.3e-13 81.3 76 48.7
CDE04G1234 Ceratophyllum demersum HOM05D007358 ORTHO05D009117 3.0e-13 80.9 79 43.0
Carub.0007s3520 Capsella rubella HOM05D007358 ORTHO05D009117 6.6e-13 79.7 79 46.8
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 9.6e-12 75.9 73 47.9
CSS0028376 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 3.1e-10 70.9 60 56.7
ECA246G0598 Erigeron canadensis HOM05D007358 ORTHO05D009117 8.4e-08 62.8 63 44.4
HPP92_024516 Vanilla planifolia HOM05D044601 ORTHO05D009117 7.1e-07 59.7 64 43.8


User provided reference genes

Program Settings