Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 3613.9 1847 100.0
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 3328.9 1941 89.6
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 2945.2 1858 81.1
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 2880.5 1852 80.0
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 2589.7 1861 71.9
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2532.7 1862 70.3
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2518.0 1862 70.1
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 2504.9 1858 69.4
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2482.2 1861 69.2
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 2437.1 1862 67.6
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 2437.1 1858 67.7
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 2419.4 1861 67.6
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 2388.6 1861 66.8
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 2387.1 1860 67.1
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 2335.8 1862 65.4
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 2330.8 1862 65.7
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 2320.0 1862 65.1
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 2318.5 1862 65.2
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 2312.0 2006 61.7
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 2305.4 2049 60.7
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 2293.8 1863 64.4
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 2275.0 1863 63.8
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 2266.9 1864 63.3
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 2262.3 1858 62.7
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 2232.6 1972 60.8
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 2212.6 1861 62.0
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 2209.9 1861 61.8
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 2208.7 1992 59.8
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 2189.8 1855 61.5
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 2175.2 1862 60.9
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 2174.4 1875 61.3
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 2173.7 1703 66.2
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 2164.8 1865 61.1
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 2159.4 1860 61.4
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 2147.5 1889 60.1
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 2143.6 1863 60.8
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 2130.9 1864 60.4
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 2130.5 1859 60.0
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 2128.6 1712 64.9
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 2115.5 1869 59.8
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 2104.3 1868 59.7
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 2103.2 1867 59.9
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 2053.5 1863 57.7
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 2051.9 1858 58.0
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 2047.3 1860 58.0
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 2039.6 1860 59.4
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 2017.7 1880 57.4
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 2016.5 1882 57.0
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 2003.8 1733 60.8
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1989.9 1863 56.4
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1972.6 1502 67.2
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1949.5 1859 56.3
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1939.1 1513 67.0
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1934.1 1859 55.7
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1931.0 1858 55.5
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1927.1 1858 55.4
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1923.3 1453 67.2
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1923.3 1866 55.9
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1920.2 1860 55.4
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1920.2 1860 55.4
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1920.2 1860 55.4
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1919.4 1860 55.0
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1916.7 1880 55.9
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1915.6 1863 55.1
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1901.3 1857 54.9
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1892.5 1858 54.7
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1886.3 1856 56.3
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1877.1 1876 54.7
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1864.0 1866 54.6
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1852.4 1885 52.8
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1772.7 1652 57.3
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1772.3 1701 56.1
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1747.3 1973 49.4
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1743.0 1889 51.1
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1666.7 1897 51.0
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1636.7 1861 49.6
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1634.8 1927 47.6
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1610.5 1864 49.1
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1551.6 1877 46.9
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1500.3 1367 57.0
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1472.6 1903 45.6
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1447.6 1358 56.3
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1441.8 1387 56.6
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1410.2 2065 42.2
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1383.6 1225 58.4
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1373.6 1863 43.4
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1361.3 1301 56.8
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1349.0 1182 61.3
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1321.6 1862 43.2
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 0.0e+00 1239.9 972 67.5
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 1.3e-295 1020.8 833 64.6
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.1e-284 984.6 1037 51.1
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 2.5e-281 973.4 944 56.5
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 3.4e-259 899.8 645 70.9
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 1.1e-257 894.8 730 64.7
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 6.7e-247 859.0 943 52.9
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.8e-236 824.3 640 65.5
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 6.1e-232 809.3 1946 31.0
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.7e-226 791.2 817 54.2
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.1e-217 761.9 847 50.3
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.2e-215 753.1 590 66.8
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.0e-214 751.1 612 63.4
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.0e-207 726.9 643 60.3
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 2.9e-205 720.7 1138 40.6
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.5e-193 681.8 787 47.4
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 2.4e-188 664.5 529 65.4
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 1.6e-176 625.2 1827 29.0
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.9e-175 619.8 535 60.9
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 9.4e-140 503.1 457 60.2
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-137 496.1 437 59.3
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 3.5e-134 484.6 432 61.6
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 1.1e-132 479.6 436 57.6
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.5e-132 477.2 372 66.1
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 1.2e-129 469.5 410 59.3
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 4.5e-126 457.6 634 43.1
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 1.3e-120 439.5 347 64.8
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.4e-119 434.1 342 65.2
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.7e-117 429.1 350 64.6
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 2.9e-117 428.3 432 54.2
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 3.4e-105 388.3 400 55.2
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 8.9e-98 363.6 338 55.3
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 6.4e-88 330.9 547 39.7
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.9e-80 305.4 448 37.9
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 6.0e-78 297.7 257 63.0
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 6.0e-78 297.7 616 33.8
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 1.0e-77 297.0 268 57.5
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 1.3e-77 296.6 328 46.0
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 3.0e-77 295.4 207 72.5
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 9.3e-71 273.9 276 54.0
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 2.7e-70 272.3 202 70.8
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.7e-64 253.1 209 64.6
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.4e-63 249.2 219 62.1
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 9.6e-60 237.3 267 50.2
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.4e-58 233.4 189 61.9
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 6.4e-56 224.6 830 26.4
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 4.6e-54 218.4 161 67.1
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.1e-52 213.8 282 45.7
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 3.7e-51 208.8 145 72.4
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.2e-49 203.8 179 61.5
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 2.2e-48 199.5 178 60.1
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.0e-45 190.7 199 53.3
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 2.3e-45 189.5 132 71.2
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 3.0e-45 189.1 142 65.5
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 1.9e-44 186.4 132 69.7
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.9e-44 186.4 217 48.8
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 1.4e-42 180.3 182 53.3
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.0e-41 176.4 131 67.9
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 2.9e-40 172.6 926 24.7
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.1e-37 161.8 227 46.7
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.7e-36 158.3 131 64.1
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.3e-35 154.8 134 61.9
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 3.1e-34 152.5 137 62.0
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 3.8e-32 145.6 156 50.6
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 7.9e-30 137.9 124 54.0
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 5.3e-26 125.2 103 64.1
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.5e-25 123.6 110 59.1
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 3.8e-24 119.0 178 41.0
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 8.5e-24 117.9 127 51.2
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.5e-24 117.9 104 54.8
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 2.1e-22 113.2 90 61.1
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 1.8e-21 110.2 120 47.5
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.8e-19 102.8 75 60.0
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 5.3e-18 98.6 94 54.3
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 2.6e-17 96.3 120 45.8
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 1.7e-16 93.6 53 86.8
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 5.2e-13 82.0 52 73.1
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 5.2e-13 82.0 82 50.0
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 1.5e-12 80.5 87 54.0
TPR.G14702 Trifolium pratense HOM05D000127 ORTHO05D000243 2.6e-12 79.7 76 52.6
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 7.5e-12 78.2 129 40.3
FAN06G2394 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.3e-11 77.4 108 39.8
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 1.6e-09 70.5 63 57.1
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 3.2e-07 62.8 51 58.8
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 3.2e-07 62.8 51 58.8
Hma1.2p1_0078F.1_g040220 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 4.2e-07 62.4 62 50.0
C05p30190 Brassica napus HOM05D015522 ORTHO05D027244 5.5e-07 62.0 113 39.8
C05p30200 Brassica napus HOM05D015522 ORTHO05D027244 5.5e-07 62.0 111 40.5
Hma1.2p1_2269F.1_g318480 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 5.5e-07 62.0 61 52.5
FAN05G1074 Fragaria x ananassa HOM05D001841 ORTHO05D001767 1.6e-06 60.5 41 73.2
Hma1.2p1_1397F.1_g280710 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 6.1e-06 58.5 61 49.2


User provided reference genes

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