Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 3905.5 1970 100.0
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 3549.2 1996 90.5
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 3120.1 1973 79.6
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2773.4 1968 71.0
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2739.5 1971 70.6
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2730.7 1966 69.6
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2728.4 1968 69.3
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2682.9 1980 69.0
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2599.7 1968 66.8
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2581.2 1964 67.2
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2571.2 1972 66.4
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2568.5 1966 66.5
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2556.2 1964 66.1
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2553.9 1967 66.0
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2550.8 2054 64.5
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2545.8 1966 65.9
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2527.3 1969 65.5
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2519.2 1959 65.4
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2511.1 1970 64.0
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2496.1 1969 65.1
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2495.3 1966 63.5
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2488.0 1964 63.6
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2485.7 1974 63.5
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2480.7 1969 64.0
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2476.8 1946 64.8
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2474.9 1959 64.2
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2474.5 1853 66.8
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2473.7 1976 64.4
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2459.9 1977 64.3
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2456.4 1942 64.1
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2432.9 2170 59.2
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2424.4 2170 59.7
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2397.5 2002 62.3
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2374.4 1967 62.1
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2374.0 1985 60.3
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2374.0 2140 59.4
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2365.1 1968 62.3
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 2362.8 1811 65.4
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2356.6 2264 55.5
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2353.2 1981 60.3
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2340.5 1968 60.2
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2325.8 1966 60.2
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2322.0 1939 62.5
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2317.3 1966 59.5
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2308.1 1970 59.4
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2305.0 1967 59.5
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2300.0 1966 59.1
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2298.5 1956 59.2
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2285.0 1967 59.1
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2265.3 1945 60.2
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2262.6 1959 59.3
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 2258.0 1601 71.3
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 2252.6 1961 58.8
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2252.2 1972 58.5
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 2246.5 1983 58.5
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2244.5 1957 58.4
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2240.7 1967 58.4
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 2238.0 1978 58.0
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2237.6 1828 61.5
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 2236.8 1964 58.1
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2234.1 1971 58.1
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2230.3 1994 57.6
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 2229.9 1980 57.7
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 2228.4 1971 58.0
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2221.0 1991 57.5
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2206.8 1967 57.9
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 2203.7 1959 59.2
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2197.9 1970 56.8
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2186.4 1956 57.4
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 2174.8 2014 55.6
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 2136.3 1967 55.9
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2115.9 1964 56.4
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 2084.3 1985 55.1
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 2056.2 2006 54.2
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2036.5 1841 57.3
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2018.8 1946 54.1
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1984.9 1976 53.1
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1753.4 1190 72.9
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1652.1 1283 64.0
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1586.6 1268 62.9
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1451.4 1841 43.8
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1383.2 1074 65.3
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1356.3 2076 38.8
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1308.1 2018 38.5
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1278.5 1005 64.1
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1229.9 1435 46.6
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1201.0 2018 36.4
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1164.8 1171 52.9
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 5.4e-311 1072.0 2131 33.7
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 2.8e-299 1033.1 784 65.9
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.6e-291 1007.3 891 58.2
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 1.1e-271 941.4 782 62.3
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 4.8e-267 926.0 959 51.9
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 4.8e-267 926.0 1015 48.9
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 5.9e-265 919.1 1130 47.0
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.4e-255 887.9 984 48.8
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 4.4e-204 716.8 674 57.3
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 9.6e-183 646.0 525 62.7
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 7.8e-177 626.3 501 63.7
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 3.8e-171 607.4 522 61.3
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 7.4e-167 593.2 524 56.9
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.5e-156 558.9 454 61.7
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.0e-147 529.6 432 61.3
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 1.7e-142 512.3 393 65.1
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 5.0e-131 474.2 653 42.7
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 2.6e-127 461.8 292 77.4
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 1.1e-117 429.9 854 33.3
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 1.3e-107 396.4 338 60.9
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 8.6e-99 367.1 224 82.1
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 4.1e-93 348.2 260 62.3
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.3e-91 342.4 392 48.2
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 8.6e-91 340.5 340 56.2
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 3.6e-81 308.5 232 68.5
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 2.4e-77 295.8 377 46.4
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 1.7e-70 273.1 196 68.9
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 1.9e-69 269.6 196 67.3
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.3e-67 262.7 231 56.7
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 1.5e-58 233.4 288 49.0
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.0e-55 223.0 319 42.0
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 8.1e-49 201.1 297 40.4
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 9.3e-45 187.6 165 58.2
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 1.1e-42 180.6 518 26.3
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 1.5e-42 180.3 328 37.2
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.2e-33 149.8 295 35.3
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 8.2e-33 147.9 117 65.8
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 1.4e-32 147.1 160 49.4
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.6e-31 142.9 139 51.8
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 4.6e-28 132.1 93 69.9
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 7.9e-28 131.3 131 52.7
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 7.9e-28 131.3 194 41.2
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 1.0e-27 131.0 132 50.8
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.0e-27 131.0 140 47.1
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 5.1e-27 128.6 223 39.0
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 3.7e-25 122.5 291 33.7
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 1.1e-21 110.9 99 54.5
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 4.2e-21 109.0 132 47.7
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.1e-20 106.7 160 43.1
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 2.0e-18 100.1 102 50.0
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 1.3e-17 97.4 90 57.8
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 6.3e-17 95.1 141 39.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 7.0e-16 91.7 74 62.2
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 5.9e-15 88.6 88 52.3
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 5.9e-15 88.6 88 52.3
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.3e-14 87.4 88 51.1
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 1.9e-13 83.6 127 40.2
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 5.5e-13 82.0 121 39.7
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 5.5e-13 82.0 53 73.6
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 2.1e-12 80.1 119 38.7
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 4.7e-12 79.0 109 35.8
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 2.3e-11 76.6 88 43.2
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 1.5e-10 73.9 48 66.7
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 1.5e-10 73.9 95 43.2
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.3e-09 70.9 117 37.6
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 1.3e-09 70.9 117 37.6
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 3.7e-09 69.3 56 55.4
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 1.1e-08 67.8 129 34.1
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 1.1e-08 67.8 56 53.6
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 4.1e-08 65.9 46 71.7
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 3.5e-07 62.8 74 40.5
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 5.9e-07 62.0 57 56.1
Actinidia30715 Actinidia chinensis HOM05D004963 ORTHO05D006638 6.5e-06 58.5 112 41.1


User provided reference genes

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