Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 7.2e-159 563.9 297 100.0
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 4.9e-107 391.7 320 74.7
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 6.4e-107 391.3 310 74.8
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.5e-95 352.8 292 74.0
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 1.4e-90 337.0 297 65.3
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 6.2e-78 295.0 246 64.6
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 1.1e-77 294.3 246 64.2
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 8.4e-75 284.6 237 63.7
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.4e-74 283.9 247 63.2
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 1.9e-74 283.5 243 64.2
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 2.5e-74 283.1 241 63.1
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 4.2e-74 282.3 241 61.8
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.2e-73 280.8 241 62.7
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 1.6e-73 280.4 247 61.5
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 1.3e-72 277.3 295 54.6
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 6.7e-72 275.0 300 54.0
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 1.1e-71 274.2 246 59.8
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.9e-71 273.5 247 60.3
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 3.3e-71 272.7 291 55.3
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 4.3e-71 272.3 235 63.4
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 4.3e-71 272.3 235 63.4
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 9.7e-71 271.2 233 62.2
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.6e-70 270.4 246 61.0
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 2.2e-70 270.0 246 61.0
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 3.7e-70 269.2 240 62.5
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 3.7e-70 269.2 228 62.7
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 4.8e-70 268.9 251 59.4
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 6.3e-70 268.5 252 59.5
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 8.2e-70 268.1 292 53.8
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 8.2e-70 268.1 287 54.4
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.1e-69 267.7 304 54.3
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.4e-69 267.3 247 59.5
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.4e-69 267.3 289 53.3
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 1.8e-69 266.9 270 54.8
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 1.8e-69 266.9 228 63.6
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.8e-69 266.9 235 60.4
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 4.1e-69 265.8 292 53.8
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 5.3e-69 265.4 254 58.7
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 9.0e-69 264.6 247 59.1
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 2.0e-68 263.5 291 54.0
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 2.6e-68 263.1 294 53.4
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 2.6e-68 263.1 236 60.6
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 5.9e-68 261.9 245 58.8
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 7.7e-68 261.5 247 58.7
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 7.7e-68 261.5 291 53.3
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.7e-67 260.4 247 58.3
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.9e-67 259.6 238 60.1
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 3.8e-67 259.2 246 60.6
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 6.5e-67 258.5 291 53.3
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 1.1e-66 257.7 243 58.4
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.9e-66 256.9 288 53.1
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 3.2e-66 256.1 289 52.6
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 4.2e-66 255.8 294 53.4
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 7.2e-66 255.0 251 57.4
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 7.2e-66 255.0 245 57.6
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 9.4e-66 254.6 240 59.2
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 9.4e-66 254.6 246 57.7
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 9.4e-66 254.6 245 56.7
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 3.6e-65 252.7 228 61.4
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 6.1e-65 251.9 230 58.7
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 7.9e-65 251.5 293 52.6
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 1.4e-64 250.8 246 58.5
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 1.4e-64 250.8 245 57.1
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 3.9e-64 249.2 236 60.2
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 8.8e-64 248.1 241 56.4
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 1.1e-63 247.7 236 57.2
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.1e-63 247.7 239 59.4
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 3.3e-63 246.1 291 50.5
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 1.3e-62 244.2 244 56.1
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.7e-62 243.8 289 53.3
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.7e-62 243.8 228 58.3
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 2.8e-62 243.0 235 57.0
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 3.7e-62 242.7 290 51.0
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 4.8e-62 242.3 239 55.6
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 6.3e-62 241.9 236 55.9
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.1e-61 241.1 261 54.4
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 1.8e-61 240.4 286 50.3
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 1.8e-61 240.4 261 52.1
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 2.4e-61 240.0 235 56.6
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 2.4e-61 240.0 235 56.2
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 4.1e-61 239.2 274 51.8
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 5.3e-61 238.8 236 55.5
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 9.1e-61 238.0 289 49.8
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 9.1e-61 238.0 236 55.5
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.5e-60 237.3 220 58.6
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 7.7e-60 235.0 292 48.6
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 5.5e-58 228.8 237 52.7
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 2.7e-57 226.5 244 52.9
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 1.8e-56 223.8 171 67.3
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 3.0e-56 223.0 292 46.2
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 3.0e-56 223.0 236 50.8
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 5.1e-56 222.2 216 57.4
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 5.7e-55 218.8 244 52.0
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 1.8e-53 213.8 212 56.6
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 9.1e-53 211.5 245 49.8
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 2.0e-52 210.3 239 51.5
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 3.5e-52 209.5 209 54.5
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 4.5e-52 209.1 243 49.0
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 4.5e-52 209.1 161 64.6
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 1.0e-51 208.0 266 48.1
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 5.0e-51 205.7 237 48.9
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 5.0e-51 205.7 236 49.2
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 1.1e-50 204.5 214 55.1
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 3.2e-50 203.0 250 46.4
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.2e-49 201.1 228 49.6
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 3.6e-49 199.5 226 50.4
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 3.6e-49 199.5 174 63.8
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 5.2e-48 195.7 167 65.3
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.0e-47 193.7 175 61.1
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 1.2e-44 184.5 239 46.9
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 1.6e-44 184.1 174 58.6
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 2.9e-43 179.9 170 58.8
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 4.2e-42 176.0 163 58.3
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 1.2e-41 174.5 156 63.5
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 7.5e-39 165.2 141 60.3
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 6.3e-38 162.2 134 61.9
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 5.9e-36 155.6 236 41.9
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 7.7e-36 155.2 160 55.6
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 5.7e-31 139.0 269 35.3
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 6.3e-30 135.6 113 61.1
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 4.7e-25 119.4 100 62.0
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 1.8e-24 117.5 173 44.5
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 6.3e-22 109.0 159 45.3
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 7.0e-21 105.5 123 52.0
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 2.7e-20 103.6 66 74.2
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 4.0e-16 89.7 111 49.5
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 9.8e-15 85.1 124 44.4
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.4e-13 81.3 240 29.6
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 2.7e-12 77.0 54 64.8
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 2.8e-09 67.0 69 52.2
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 8.0e-09 65.5 42 69.0
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 1.7e-06 57.8 50 58.0


User provided reference genes

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