Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.9e-142 507.7 285 100.0
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.3e-128 463.4 298 85.9
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 2.8e-128 462.2 275 84.4
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 6.3e-128 461.1 244 92.2
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 4.8e-120 434.9 239 86.2
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 6.3e-120 434.5 239 85.8
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 4.5e-118 428.3 229 86.9
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 6.8e-114 414.5 234 83.8
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 8.9e-114 414.1 240 82.1
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.2e-113 413.7 234 82.5
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 2.0e-113 412.9 234 83.3
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 6.3e-112 407.9 239 79.5
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 8.3e-112 407.5 226 83.6
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.1e-111 407.1 240 82.1
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.8e-111 406.4 229 82.5
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 4.1e-111 405.2 241 78.8
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 7.0e-111 404.4 240 80.0
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 7.0e-111 404.4 235 82.6
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 1.2e-110 403.7 245 79.2
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.2e-110 403.7 236 80.9
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.2e-110 403.7 238 81.5
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 2.7e-110 402.5 239 80.3
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 5.9e-110 401.4 229 81.2
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.0e-109 400.6 236 80.1
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 1.0e-109 400.6 246 78.5
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 1.0e-109 400.6 221 84.2
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.7e-109 399.8 228 82.9
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.7e-109 399.8 228 82.9
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 2.9e-109 399.1 221 84.6
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 5.0e-109 398.3 250 77.2
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 6.6e-109 397.9 240 79.6
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.5e-108 396.7 240 79.2
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 1.5e-108 396.7 230 83.9
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 1.9e-108 396.4 235 79.1
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 1.9e-108 396.4 238 79.4
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.9e-108 396.4 239 79.9
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 2.5e-108 396.0 245 76.3
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 4.3e-108 395.2 240 79.2
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 9.5e-108 394.0 230 81.3
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 1.2e-107 393.7 235 78.7
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.1e-107 392.9 230 80.4
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 8.0e-107 391.0 240 77.9
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 8.0e-107 391.0 245 78.4
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 1.4e-106 390.2 238 79.0
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 3.0e-106 389.0 231 80.1
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 4.0e-106 388.7 239 77.4
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 5.8e-105 384.8 229 80.3
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 2.9e-104 382.5 221 81.9
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 3.7e-104 382.1 229 79.0
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 6.4e-104 381.3 244 76.2
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 1.1e-103 380.6 239 76.2
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 2.4e-103 379.4 239 77.0
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 4.1e-103 378.6 229 78.6
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 7.0e-103 377.9 229 77.7
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 1.6e-102 376.7 238 75.6
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 2.0e-102 376.3 236 75.8
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 2.7e-102 375.9 239 75.7
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 4.6e-102 375.2 238 75.2
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 7.8e-102 374.4 239 77.0
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.0e-101 374.0 234 78.6
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 6.6e-101 371.3 238 75.6
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 1.1e-100 370.5 230 75.2
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 1.5e-100 370.2 238 76.5
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.9e-100 369.8 221 79.2
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 9.5e-100 367.5 221 77.8
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 9.5e-100 367.5 229 76.0
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 1.2e-99 367.1 232 75.9
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 3.6e-99 365.5 229 76.0
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 3.6e-99 365.5 229 75.5
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 3.6e-99 365.5 229 75.1
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 3.6e-99 365.5 229 75.1
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 3.6e-99 365.5 229 74.7
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 3.6e-99 365.5 223 79.8
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 1.1e-98 364.0 234 73.9
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 4.0e-98 362.1 237 73.4
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 4.0e-98 362.1 251 71.3
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 4.0e-98 362.1 229 74.7
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 6.8e-98 361.3 229 73.4
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 1.5e-97 360.1 229 74.7
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 3.4e-97 359.0 228 74.6
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 3.4e-97 359.0 251 71.3
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.8e-97 358.2 292 74.0
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 1.3e-96 357.1 229 72.9
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 4.9e-96 355.1 235 72.3
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 6.0e-94 348.2 264 65.9
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 6.6e-93 344.7 229 69.9
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 6.6e-93 344.7 238 69.3
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 1.5e-92 343.6 239 69.9
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.9e-92 343.2 228 69.7
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 8.9e-90 334.3 239 69.5
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 4.9e-88 328.6 197 78.7
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 2.4e-87 326.2 183 85.8
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 7.1e-87 324.7 239 66.5
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 7.1e-87 324.7 256 63.3
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.2e-86 323.9 183 81.4
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 2.1e-86 323.2 201 74.1
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 3.5e-86 322.4 226 70.4
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 3.9e-85 318.9 234 67.9
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 7.3e-84 314.7 221 69.2
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 1.6e-83 313.5 201 74.1
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 4.0e-82 308.9 230 65.2
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 1.5e-81 307.0 233 63.9
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 3.4e-81 305.8 183 79.8
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 9.9e-81 304.3 221 65.6
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 1.3e-80 303.9 211 68.7
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 1.3e-80 303.9 211 68.7
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 7.1e-79 298.1 244 60.2
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 1.6e-78 297.0 229 61.1
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 1.6e-78 297.0 183 77.0
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 8.7e-77 291.2 179 76.5
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 1.9e-76 290.0 175 80.6
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 2.0e-73 280.0 228 61.0
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 4.2e-71 272.3 164 79.9
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 6.9e-66 255.0 193 67.4
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 5.3e-58 228.8 231 52.8
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 3.3e-52 209.5 220 53.6
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 1.4e-50 204.1 265 41.9
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 9.0e-50 201.4 309 39.8
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 4.5e-49 199.1 126 76.2
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 1.0e-48 198.0 131 70.2
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 1.1e-47 194.5 124 72.6
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 3.7e-43 179.5 114 76.3
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 2.4e-42 176.8 275 39.3
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 2.2e-40 170.2 127 66.1
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 3.4e-33 146.4 78 87.2
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 3.4e-33 146.4 116 62.1
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 3.6e-30 136.3 153 52.3
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 1.1e-28 131.3 77 77.9
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 3.3e-28 129.8 72 81.9
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 3.5e-25 119.8 193 35.8
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 5.0e-24 115.9 81 66.7
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 3.3e-20 103.2 77 64.9
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 4.2e-15 86.3 56 67.9
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 5.7e-12 75.9 89 46.1


User provided reference genes

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