Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 4.2e-159 564.7 298 100.0
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 7.3e-127 457.6 298 85.9
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 1.7e-120 436.4 303 76.6
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 2.8e-118 429.1 330 75.8
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 2.9e-107 392.5 252 77.4
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 3.8e-107 392.1 252 77.0
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.1e-106 390.6 310 74.8
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 9.3e-106 387.5 242 77.3
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.6e-102 376.7 247 75.3
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 2.1e-102 376.3 253 73.9
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 2.8e-102 375.9 247 74.1
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 4.8e-102 375.2 247 74.9
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 6.2e-102 374.8 253 74.7
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 2.6e-100 369.4 239 74.9
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 1.3e-99 367.1 252 70.6
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 1.7e-99 366.7 234 76.5
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.7e-99 366.7 253 71.9
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 1.7e-99 366.7 248 74.2
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 3.8e-99 365.5 258 71.3
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 6.4e-99 364.8 301 62.8
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 8.4e-99 364.4 252 72.2
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 2.4e-98 362.8 295 63.7
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 3.2e-98 362.5 298 63.4
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 4.2e-98 362.1 241 74.3
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 4.2e-98 362.1 241 74.3
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 4.2e-98 362.1 310 63.9
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 9.3e-98 360.9 297 63.3
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 1.2e-97 360.5 306 62.4
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.6e-97 360.1 253 71.5
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 2.1e-97 359.8 276 65.2
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 2.1e-97 359.8 298 63.1
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 2.1e-97 359.8 242 72.7
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 3.5e-97 359.0 243 75.3
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 6.0e-97 358.2 234 74.8
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 7.9e-97 357.8 253 70.8
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.3e-96 357.1 252 71.4
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 2.3e-96 356.3 253 70.8
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 3.0e-96 355.9 263 69.2
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 1.9e-95 353.2 297 62.3
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 2.5e-95 352.8 251 70.5
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 3.3e-95 352.4 258 70.5
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 4.3e-95 352.1 300 63.7
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 4.3e-95 352.1 253 69.6
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 4.3e-95 352.1 293 63.1
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 5.6e-95 351.7 244 71.7
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 9.6e-95 350.9 295 62.7
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 4.8e-94 348.6 300 62.3
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 5.3e-93 345.1 294 62.6
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 6.9e-93 344.7 234 73.1
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 6.9e-93 344.7 242 70.7
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 2.0e-92 343.2 297 61.6
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 3.4e-92 342.4 299 62.2
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 3.4e-92 342.4 257 68.1
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 7.6e-92 341.3 252 69.0
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 7.6e-92 341.3 297 62.0
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.3e-91 340.5 247 70.4
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 2.9e-91 339.3 251 67.7
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 3.8e-91 339.0 249 67.9
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 6.5e-91 338.2 252 67.9
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 1.1e-90 337.4 251 67.3
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 4.2e-90 335.5 252 68.7
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 1.2e-89 334.0 251 67.7
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 4.6e-89 332.0 234 70.5
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 1.8e-88 330.1 242 68.2
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 2.3e-88 329.7 245 67.8
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 6.7e-88 328.2 242 68.2
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 6.7e-88 328.2 242 67.8
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 6.7e-88 328.2 236 71.2
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 8.7e-88 327.8 242 66.9
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 8.7e-88 327.8 242 66.5
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 8.7e-88 327.8 298 60.7
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 8.7e-88 327.8 298 59.1
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.5e-87 327.0 234 68.4
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 2.5e-87 326.2 247 66.0
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 9.6e-87 324.3 250 65.6
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 9.6e-87 324.3 264 64.0
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.3e-86 323.9 295 61.4
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 1.6e-86 323.6 242 65.3
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 2.8e-86 322.8 242 66.1
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 4.8e-86 322.0 297 58.2
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 8.2e-86 321.2 264 64.0
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 1.4e-85 320.5 242 65.3
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 1.4e-85 320.5 292 57.9
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 1.8e-85 320.1 295 57.6
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 4.2e-82 308.9 277 58.8
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 9.3e-82 307.8 242 62.4
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 9.3e-82 307.8 241 62.7
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 3.6e-81 305.8 252 62.3
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 1.8e-80 303.5 186 80.1
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 3.9e-80 302.4 298 55.0
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.5e-79 300.4 252 61.9
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 1.3e-78 297.4 203 69.0
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 8.2e-78 294.7 242 62.4
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 5.9e-76 288.5 269 56.9
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 5.9e-76 288.5 258 60.1
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 2.2e-75 286.6 252 59.1
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 1.4e-74 283.9 239 61.9
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 4.2e-74 282.3 186 74.2
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 9.4e-74 281.2 234 61.1
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 2.1e-73 280.0 245 60.8
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 3.0e-72 276.2 243 58.0
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 1.1e-71 274.2 186 72.0
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 2.0e-71 273.5 255 57.6
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.6e-71 273.1 234 58.1
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 4.8e-70 268.9 246 56.1
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 8.2e-70 268.1 182 71.4
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 4.1e-69 265.8 178 74.7
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 9.1e-69 264.6 223 60.1
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.3e-67 260.8 257 53.3
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 1.7e-67 260.4 242 54.1
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 2.2e-67 260.0 276 53.6
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 5.2e-64 248.8 167 73.7
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 1.1e-63 247.7 241 53.9
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 7.5e-55 218.4 206 58.3
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 9.1e-53 211.5 201 56.7
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 1.2e-49 201.1 244 48.0
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 5.4e-45 185.7 309 38.5
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 4.5e-44 182.6 141 63.1
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 2.9e-43 179.9 134 64.9
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 4.2e-42 176.0 129 69.0
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 7.2e-42 175.3 278 38.1
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 3.5e-36 156.4 117 67.5
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 3.8e-35 152.9 286 36.0
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 6.6e-35 152.1 130 59.2
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.8e-33 146.7 116 62.1
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 3.5e-28 129.8 72 81.9
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 3.9e-27 126.3 76 78.9
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 8.6e-27 125.2 163 48.5
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 8.9e-24 115.2 76 69.7
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 5.0e-19 99.4 260 30.0
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 5.0e-19 99.4 79 58.2
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 4.4e-15 86.3 56 67.9
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 2.9e-14 83.6 76 53.9
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 1.2e-09 68.2 91 42.9


User provided reference genes

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