Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 2213.3 1114 100.0
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1853.6 1128 82.9
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1849.3 1158 83.8
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1672.9 1129 74.4
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1666.4 1130 73.9
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1660.2 1124 73.2
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1636.3 1123 73.0
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1633.2 1115 72.7
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1619.0 1128 72.8
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1607.8 1129 72.8
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1600.1 1128 71.2
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1595.5 1128 71.2
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1594.7 1129 71.8
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1590.1 950 84.3
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1588.9 1183 68.0
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1584.3 1129 70.3
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1582.4 1129 70.9
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1577.8 1128 70.7
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1561.6 1130 70.4
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1555.8 1128 69.9
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1550.0 1123 70.0
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1540.0 1129 69.2
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1536.5 1128 68.2
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1535.8 1135 69.4
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1530.4 1137 68.5
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1528.8 1150 67.8
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1526.9 1124 67.7
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1525.4 1123 67.7
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1523.1 1128 68.5
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1521.9 1129 67.9
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1514.6 1133 66.7
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1512.7 1160 67.7
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1510.4 1128 67.7
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1510.0 1196 65.6
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1504.6 1132 67.2
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1503.8 1128 67.5
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1503.8 1127 68.2
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1503.4 1127 68.2
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1500.0 1128 67.4
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1491.5 1130 67.0
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1489.6 1126 67.5
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1488.0 1129 66.3
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1487.6 1128 67.1
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1482.6 1129 66.3
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1480.3 1126 66.3
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1476.8 1134 66.7
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1474.9 1130 67.3
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1472.2 1124 65.6
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1469.1 1079 70.3
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1468.4 1124 66.7
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1465.3 1125 65.9
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1464.5 1125 65.9
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1446.8 1127 64.4
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1442.9 1122 65.6
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1439.1 1129 65.0
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1434.1 1129 64.8
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1430.6 1116 65.0
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1426.0 1133 65.9
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1420.6 945 75.0
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1416.7 1124 64.1
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1414.8 1136 63.8
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1412.5 1129 63.9
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1409.4 1138 63.2
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1407.9 1126 63.3
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1398.3 1133 65.0
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1397.1 1120 63.8
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1396.7 1127 63.4
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1395.2 1182 60.3
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1394.8 1129 63.6
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1389.4 957 72.9
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1382.9 1104 64.3
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1379.8 1118 63.7
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1375.1 1113 62.8
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1368.2 1209 59.3
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1364.0 1118 63.0
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1357.0 1104 64.0
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1352.4 1101 63.9
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1352.4 1101 63.9
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1350.5 1101 63.7
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1350.5 1099 64.0
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1349.0 1127 60.4
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1346.3 1100 63.4
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1342.8 1101 63.5
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1338.6 1103 62.6
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1338.2 1021 67.5
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1335.1 1089 63.4
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1332.8 959 70.6
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1332.4 1101 63.4
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1326.2 1090 63.3
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1324.7 1199 57.3
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1320.4 1105 62.5
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1319.3 1016 67.8
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1315.1 1122 61.3
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1309.7 1105 62.0
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1307.0 1104 62.0
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1293.9 1106 61.5
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1278.5 1106 60.7
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1273.8 1171 57.9
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1270.4 1126 58.2
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1261.1 1021 61.8
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1253.4 955 67.4
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1226.5 794 75.9
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1225.3 852 71.7
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1221.1 1134 55.8
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1176.8 900 65.3
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 0.0e+00 1154.8 1098 56.1
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 0.0e+00 1124.8 1160 52.7
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1103.6 798 69.4
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1082.8 758 70.4
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 2.2e-285 986.1 655 74.2
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 3.8e-285 985.3 1045 51.8
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 9.6e-281 970.7 1143 46.7
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.4e-271 940.3 1025 49.5
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 4.8e-264 915.2 1159 44.8
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 4.1e-255 885.6 821 55.5
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 8.5e-253 877.9 1102 43.6
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.1e-207 726.5 978 42.4
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 8.3e-184 648.7 1109 38.3
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 9.2e-175 618.6 414 74.2
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 6.6e-165 585.9 1115 36.1
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 1.4e-162 578.2 467 60.8
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.9e-158 562.4 516 58.3
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 5.9e-121 439.9 331 63.1
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 3.2e-103 380.9 1287 26.3
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 1.2e-102 379.0 328 58.2
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 2.1e-94 351.7 525 40.6
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.8e-85 320.1 220 72.3
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.2e-78 299.3 379 45.4
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 6.4e-75 287.0 230 62.2
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 4.6e-73 280.8 366 44.8
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 9.2e-66 256.5 257 54.1
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 1.3e-64 252.7 211 60.7
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 8.6e-64 250.0 238 55.0
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.0e-56 224.9 209 56.5
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.9e-55 222.2 223 54.3
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.5e-44 184.5 223 48.0
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.5e-44 184.5 223 48.0
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.5e-44 184.5 223 48.0
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.7e-43 182.6 223 47.5
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.8e-43 181.4 223 47.5
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.8e-43 181.4 243 43.6
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.9e-42 179.1 143 60.8
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 7.1e-42 177.2 421 29.2
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 5.3e-37 161.0 228 43.9
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 5.3e-37 161.0 228 43.9
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 1.4e-34 152.9 228 42.5
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.2e-34 151.4 223 43.0
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.0e-27 130.2 369 29.3
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 2.5e-26 125.6 92 62.0
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.5e-25 121.7 241 34.9
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 6.1e-25 120.9 130 48.5
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.5e-23 116.3 96 63.5
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.7e-22 111.7 73 69.9
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.4e-21 109.0 81 64.2
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 9.4e-18 97.1 56 71.4
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 1.6e-17 96.3 307 26.7
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 1.3e-14 86.7 55 74.5


User provided reference genes

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