Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.6e-130 469.5 254 100.0
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 4.6e-122 441.4 272 86.0
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 8.7e-105 384.0 255 80.4
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.8e-102 376.3 255 76.5
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.0e-100 370.5 255 76.5
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.7e-92 343.2 254 67.3
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 2.2e-92 342.8 254 69.7
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.1e-90 336.3 256 69.1
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 3.9e-89 332.0 257 68.9
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 3.9e-89 332.0 254 65.4
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 8.8e-89 330.9 258 69.4
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 8.8e-89 330.9 254 67.3
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.5e-88 330.1 256 70.3
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 3.3e-88 328.9 246 73.6
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 4.4e-88 328.6 256 65.6
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.4e-88 328.6 255 67.8
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 1.3e-87 327.0 255 71.4
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.3e-87 327.0 254 68.1
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.8e-87 325.9 254 69.7
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.8e-87 325.9 256 71.9
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 6.3e-87 324.7 287 60.6
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.1e-86 323.9 254 67.3
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.4e-86 323.6 245 68.2
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 1.4e-86 323.6 243 73.7
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.3e-86 321.6 256 70.7
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 7.0e-86 321.2 248 67.7
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 9.1e-86 320.9 256 70.7
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 9.1e-86 320.9 254 63.4
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.0e-85 319.7 257 63.4
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.0e-85 319.7 254 67.3
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.6e-85 319.3 257 63.4
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.5e-85 318.9 245 69.4
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 2.2e-84 316.2 247 67.6
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 2.9e-84 315.8 247 66.4
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 3.8e-84 315.5 259 63.3
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 3.8e-84 315.5 248 66.9
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 6.5e-84 314.7 255 65.5
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 8.5e-84 314.3 258 67.4
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 8.5e-84 314.3 233 67.0
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.5e-83 312.8 254 65.4
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 2.7e-82 309.3 255 62.0
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 3.6e-82 308.9 233 66.5
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 6.1e-82 308.1 228 69.7
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 1.0e-81 307.4 256 64.1
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 1.0e-81 307.4 235 67.7
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.0e-81 305.8 249 65.5
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 6.7e-81 304.7 254 65.4
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.5e-80 303.5 256 65.6
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 2.6e-80 302.8 257 62.3
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 7.5e-80 301.2 247 63.6
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 9.7e-80 300.8 251 62.2
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.3e-79 300.4 224 66.5
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 1.3e-79 300.4 258 60.1
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.3e-79 300.4 248 65.3
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 2.2e-79 299.7 248 62.1
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 2.2e-79 299.7 245 62.4
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 4.8e-79 298.5 256 61.3
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 6.3e-79 298.1 257 62.3
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 8.2e-79 297.7 225 68.0
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 8.2e-79 297.7 256 61.3
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 8.2e-79 297.7 257 62.3
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 1.8e-78 296.6 247 63.6
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 2.4e-78 296.2 256 61.3
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 4.1e-78 295.4 243 61.3
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 7.0e-78 294.7 251 61.4
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 9.1e-78 294.3 237 62.9
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 1.2e-77 293.9 256 60.9
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.2e-77 293.9 227 67.0
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 5.9e-77 291.6 234 64.5
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.0e-76 290.8 242 62.4
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 1.5e-75 287.0 252 61.9
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 1.5e-75 287.0 245 61.2
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 7.2e-75 284.6 247 58.7
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 9.4e-75 284.3 245 63.3
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 6.1e-74 281.6 281 55.5
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 8.0e-74 281.2 214 67.8
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 5.2e-73 278.5 256 62.9
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 6.8e-73 278.1 204 77.0
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 1.5e-72 276.9 244 60.2
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 2.0e-72 276.6 235 61.3
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 2.0e-72 276.6 244 59.8
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 2.0e-72 276.6 231 62.3
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 2.6e-72 276.2 287 52.3
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 4.4e-72 275.4 247 60.7
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 5.7e-72 275.0 255 56.5
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 1.3e-71 273.9 245 60.0
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 2.8e-71 272.7 255 57.6
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 6.3e-71 271.6 234 62.0
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.8e-70 270.0 257 57.6
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.4e-70 269.6 277 53.1
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 4.1e-70 268.9 256 60.2
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 7.0e-70 268.1 257 56.4
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 7.0e-70 268.1 277 52.7
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 9.1e-70 267.7 256 59.4
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 1.2e-69 267.3 238 61.3
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 1.6e-69 266.9 246 58.9
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 2.0e-69 266.5 256 61.3
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 3.5e-69 265.8 248 59.7
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 4.5e-69 265.4 241 59.3
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 2.9e-68 262.7 276 53.3
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 3.8e-68 262.3 258 56.2
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 5.0e-68 261.9 255 59.2
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 1.1e-67 260.8 232 63.4
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 4.2e-67 258.8 262 54.6
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 4.2e-67 258.8 262 54.6
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 5.5e-67 258.5 189 72.5
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 9.4e-67 257.7 262 54.6
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 9.4e-67 257.7 225 57.3
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.1e-66 256.5 242 57.4
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 1.4e-65 253.8 260 53.1
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 1.4e-65 253.8 260 53.1
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 3.0e-65 252.7 230 54.8
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 3.0e-65 252.7 164 76.8
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 6.8e-65 251.5 265 55.1
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 1.2e-64 250.8 230 58.7
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 8.3e-63 244.6 195 65.1
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.2e-61 240.7 238 53.4
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 2.3e-60 236.5 207 64.3
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 5.6e-59 231.9 230 61.3
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 2.1e-58 229.9 232 53.4
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 8.0e-58 228.0 167 67.7
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 2.9e-55 219.5 189 61.4
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.8e-50 203.0 256 52.0
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 4.7e-50 202.2 231 47.6
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 3.1e-49 199.5 234 47.9
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 4.4e-48 195.7 169 60.4
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 2.9e-47 193.0 240 47.9
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 6.4e-47 191.8 180 57.2
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 1.4e-46 190.7 168 64.3
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 1.5e-43 180.6 238 45.4
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 4.7e-42 175.6 124 68.5
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 2.6e-40 169.9 125 65.6
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.5e-37 159.5 200 50.5
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.7e-36 157.1 215 46.0
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.1e-35 154.5 113 73.5
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 4.7e-34 149.1 238 40.3
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 1.5e-32 144.1 238 38.2
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.1e-29 133.7 88 68.2
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.1e-28 129.0 137 54.0
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.5e-27 127.5 137 54.0
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.9e-27 127.1 148 49.3
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 4.3e-27 125.9 136 53.7
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.4e-25 120.9 118 50.0
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 7.6e-24 115.2 163 46.6
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 8.7e-20 101.7 121 47.9
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 8.7e-20 101.7 121 47.9
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 8.7e-20 101.7 121 47.9
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 1.2e-16 91.3 116 52.6
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 1.3e-15 87.8 102 45.1
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.4e-14 84.3 253 31.2
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 2.1e-13 80.5 193 35.2
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 3.3e-11 73.2 105 40.0
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 9.6e-11 71.6 47 74.5
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.1e-10 70.5 77 51.9
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 6.2e-10 68.9 59 64.4
PSO782G2536 Papaver somniferum HOM05D004631 ORTHO05D005223 1.9e-06 57.4 87 43.7
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 2.4e-06 57.0 201 25.9
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 2.4e-06 57.0 35 74.3
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 3.2e-06 56.6 118 32.2
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 7.1e-06 55.5 171 28.7
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 7.1e-06 55.5 180 28.9
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 9.3e-06 55.1 116 36.2


User provided reference genes

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