Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 2.8e-277 958.0 487 100.0
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 2.0e-227 792.3 517 78.3
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 8.9e-223 776.9 519 75.5
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 4.0e-215 751.5 521 73.9
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 2.6e-214 748.8 516 74.4
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 2.6e-214 748.8 534 69.9
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.9e-213 745.3 506 75.5
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 4.6e-211 738.0 523 72.5
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 3.0e-210 735.3 515 73.4
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 1.6e-208 729.6 508 70.5
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 1.4e-207 726.5 516 71.1
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 4.4e-206 721.5 513 71.2
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 5.8e-206 721.1 500 79.8
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 3.7e-205 718.4 505 71.5
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 1.1e-204 716.8 523 71.1
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 6.0e-203 711.1 504 71.2
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.1e-201 706.8 467 73.9
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 1.5e-201 706.4 510 71.6
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 1.9e-201 706.1 510 71.4
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 4.3e-201 704.9 499 71.7
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 1.2e-200 703.4 521 70.2
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 3.6e-200 701.8 529 68.1
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 4.7e-200 701.4 513 69.0
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.4e-199 699.1 499 72.7
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 2.4e-199 699.1 465 71.8
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 4.0e-199 698.4 465 71.8
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 6.8e-199 697.6 464 72.4
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 8.9e-199 697.2 517 69.6
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 8.9e-199 697.2 512 69.9
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 1.5e-198 696.4 520 69.2
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 4.4e-198 694.9 501 67.1
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 7.6e-198 694.1 501 67.1
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 7.6e-198 694.1 504 68.3
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 2.2e-197 692.6 525 66.9
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 4.9e-197 691.4 471 71.1
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 7.1e-196 687.6 517 71.0
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 1.2e-195 686.8 515 66.4
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 1.6e-195 686.4 524 67.6
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 2.1e-195 686.0 517 69.2
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 2.1e-195 686.0 453 72.2
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 2.7e-195 685.6 511 69.9
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 7.8e-195 684.1 465 72.0
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 3.0e-194 682.2 518 66.0
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.1e-192 676.0 530 65.7
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 1.1e-191 673.7 456 71.1
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 6.9e-191 671.0 443 72.0
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 2.6e-190 669.1 437 73.5
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 2.6e-190 669.1 473 69.3
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 2.6e-190 669.1 462 69.5
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 3.4e-190 668.7 466 70.4
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 5.8e-190 667.9 462 69.3
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 4.9e-189 664.8 518 64.3
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 1.4e-188 663.3 456 70.2
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 2.4e-188 662.5 457 70.2
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 1.0e-186 657.1 502 64.5
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 1.0e-186 657.1 499 64.7
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 1.3e-186 656.8 489 65.6
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 1.7e-186 656.4 462 68.2
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 3.0e-186 655.6 499 64.3
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 5.1e-186 654.8 450 70.2
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 6.6e-186 654.4 504 67.7
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 8.7e-186 654.1 504 64.5
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 1.1e-185 653.7 508 63.8
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 1.1e-185 653.7 504 64.1
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 1.1e-185 653.7 437 70.3
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 1.9e-185 652.9 538 61.9
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 5.6e-185 651.4 516 62.6
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 1.3e-184 650.2 502 64.5
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 3.1e-183 645.6 485 65.2
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 4.0e-183 645.2 528 62.1
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 6.9e-183 644.4 507 63.1
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 2.0e-182 642.9 460 68.0
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 1.7e-181 639.8 488 63.5
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 2.9e-181 639.0 464 67.0
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 1.5e-177 626.7 512 61.7
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 3.4e-174 615.5 509 61.9
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 2.2e-173 612.8 453 66.7
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 2.3e-170 602.8 481 62.4
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 1.6e-168 596.7 464 62.3
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 2.4e-167 592.8 415 71.1
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 8.5e-165 584.3 415 70.8
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 2.3e-162 576.2 459 60.8
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 1.5e-161 573.5 409 67.7
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 5.3e-159 565.1 487 58.5
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 5.3e-159 565.1 463 59.0
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 2.0e-158 563.1 447 63.1
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 6.7e-154 548.1 436 60.8
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 1.3e-152 543.9 517 57.1
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.0e-138 497.7 368 69.6
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 1.6e-131 473.8 465 50.3
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 2.1e-131 473.4 457 49.7
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 8.8e-130 468.0 340 67.6
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 3.7e-128 462.6 326 72.7
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 5.0e-125 452.2 315 70.5
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 2.2e-120 436.8 338 66.0
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 4.1e-119 432.6 446 47.5
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 7.3e-108 395.2 430 51.2
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 9.5e-100 368.2 268 69.8
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 3.6e-99 366.3 385 46.2
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 2.2e-96 357.1 244 69.7
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 3.7e-96 356.3 309 57.0
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 6.0e-94 349.0 361 46.8
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 2.8e-91 340.1 280 62.1
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 1.7e-88 330.9 301 60.1
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 8.4e-80 302.0 211 70.6
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 5.4e-79 299.3 408 43.9
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 2.3e-69 267.3 435 38.6
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 2.9e-64 250.4 186 66.7
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 1.4e-55 221.5 121 77.7
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 1.3e-53 214.9 498 30.9
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 5.9e-41 172.9 133 61.7
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 1.1e-31 142.1 89 76.4
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 5.2e-29 133.3 425 29.9
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 8.2e-27 125.9 90 68.9
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 8.8e-21 105.9 73 65.8
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.7e-17 94.4 75 60.0
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 4.5e-17 93.6 171 30.4
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 7.7e-17 92.8 130 43.8
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 4.2e-15 87.0 91 52.7
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 1.2e-14 85.5 378 23.0
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 1.6e-14 85.1 87 47.1
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 4.4e-12 77.0 318 23.0
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 2.2e-11 74.7 80 46.2
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 1.1e-10 72.4 40 72.5
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 4.5e-09 67.0 94 42.6
arahy.Tifrunner.gnm1.ann1.3FLP3Q Arachis hypogaea HOM05D005888 ORTHO05D007791 8.0e-06 56.2 36 63.9


User provided reference genes

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