Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 7.6e-138 493.8 245 100.0
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 1.5e-109 399.8 245 81.6
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 1.6e-108 396.4 243 81.1
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 1.5e-106 389.8 246 78.9
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 4.9e-105 384.8 249 77.9
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 1.9e-104 382.9 244 77.9
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 1.9e-104 382.9 246 77.2
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 1.9e-104 382.9 240 78.3
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 6.0e-103 377.9 274 71.5
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 1.5e-101 373.2 242 76.9
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 2.5e-101 372.5 241 76.3
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 5.7e-101 371.3 247 76.5
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 5.7e-101 371.3 248 75.8
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 9.6e-101 370.5 281 69.8
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 1.3e-100 370.2 247 74.5
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 3.7e-100 368.6 248 74.6
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 3.7e-100 368.6 248 75.4
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 4.8e-100 368.2 256 72.3
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 8.2e-100 367.5 246 75.6
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 1.1e-99 367.1 241 76.8
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 1.4e-99 366.7 241 76.3
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 1.8e-99 366.3 241 75.9
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 5.3e-99 364.8 240 76.7
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 9.0e-99 364.0 246 74.0
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 9.0e-99 364.0 249 73.5
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 9.0e-99 364.0 241 75.5
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 2.0e-98 362.8 239 76.6
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 2.6e-98 362.5 232 77.6
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.0e-97 360.5 281 69.0
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 1.0e-97 360.5 248 72.2
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 1.3e-97 360.1 245 72.7
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 1.3e-97 360.1 242 73.6
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 1.3e-97 360.1 248 73.0
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 1.7e-97 359.8 244 73.8
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 2.2e-97 359.4 218 83.5
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 2.9e-97 359.0 280 68.2
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 3.8e-97 358.6 242 73.1
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 8.5e-97 357.5 242 73.1
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 1.9e-96 356.3 246 73.2
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 7.2e-96 354.4 280 67.5
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 7.9e-95 350.9 241 73.0
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 5.1e-94 348.2 234 76.5
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 6.7e-94 347.8 244 70.1
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 1.1e-93 347.1 243 73.7
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 7.4e-93 344.4 246 69.5
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 9.7e-93 344.0 247 68.8
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 1.6e-92 343.2 248 69.4
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 2.8e-92 342.4 249 68.3
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 8.2e-92 340.9 249 68.3
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 2.4e-91 339.3 255 65.5
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 3.1e-91 339.0 245 69.4
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 4.1e-91 338.6 254 68.5
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 6.9e-91 337.8 248 67.7
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 9.1e-91 337.4 249 69.5
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 1.2e-90 337.0 251 68.5
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 1.2e-90 337.0 248 70.2
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 2.6e-90 335.9 240 70.4
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 2.6e-90 335.9 246 67.1
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 4.5e-90 335.1 242 69.8
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 4.5e-90 335.1 242 69.8
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 7.7e-90 334.3 246 66.7
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 1.3e-89 333.6 251 68.1
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 1.7e-89 333.2 254 65.7
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 2.9e-89 332.4 244 68.0
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 2.9e-89 332.4 240 70.0
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 3.8e-89 332.0 245 69.8
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 3.8e-89 332.0 248 69.0
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 5.0e-89 331.6 230 72.2
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 6.5e-89 331.3 247 68.0
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 1.9e-88 329.7 252 66.7
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 2.5e-88 329.3 252 65.9
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 2.5e-88 329.3 277 62.8
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 4.2e-88 328.6 254 66.9
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 5.5e-88 328.2 245 68.6
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 9.4e-88 327.4 264 63.6
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 1.6e-87 326.6 254 66.1
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 1.6e-87 326.6 254 66.1
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 1.0e-86 323.9 248 66.5
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 1.8e-86 323.2 255 66.3
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 1.8e-86 323.2 255 66.3
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 3.0e-86 322.4 264 64.8
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 1.5e-85 320.1 252 65.1
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 9.7e-85 317.4 248 64.1
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 1.7e-84 316.6 249 64.3
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 1.8e-83 313.2 247 63.2
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 2.4e-83 312.8 271 61.3
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 2.0e-82 309.7 249 63.5
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 1.4e-80 303.5 243 64.6
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 1.9e-80 303.1 259 66.8
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 3.6e-79 298.9 252 60.7
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 1.0e-78 297.4 262 61.1
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 1.4e-75 287.0 275 54.2
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 1.4e-75 287.0 245 58.8
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 7.0e-75 284.6 270 54.8
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 3.5e-74 282.3 228 64.5
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 7.2e-72 274.6 179 74.3
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 1.5e-69 266.9 246 56.5
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 1.7e-68 263.5 235 61.3
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 3.8e-65 252.3 172 72.1
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 6.5e-57 224.9 131 78.6
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 6.8e-54 214.9 218 50.9
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 2.0e-53 213.4 271 42.4
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 3.4e-53 212.6 256 45.3
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 1.1e-48 197.6 246 51.2
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 3.4e-45 186.0 246 44.3
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 3.4e-45 186.0 121 71.9
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 3.5e-42 176.0 166 50.0
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 3.7e-36 156.0 121 61.2
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 3.0e-33 146.4 150 58.7
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 1.4e-30 137.5 124 62.1
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 3.1e-22 109.8 108 58.3
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 6.8e-22 108.6 112 54.5
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 3.4e-21 106.3 166 34.9
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 3.8e-12 76.3 69 55.1
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.1e-08 64.7 38 81.6
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 4.3e-08 62.8 62 46.8
Actinidia36204 Actinidia chinensis HOM05D006878 ORTHO05D008579 3.6e-07 59.7 51 60.8
Pp3c4_16200 Physcomitrium patens HOM05D006878 ORTHO05D008579 1.4e-06 57.8 133 33.8


User provided reference genes

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