Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007162 Carpinus fangiana HOM05D006339 ORTHO05D007892 1.9e-62 242.3 116 100.0
QL02p069471 Quercus lobata HOM05D006339 ORTHO05D007892 6.5e-47 190.7 99 92.9
Ciclev10016247m.g Citrus clementina HOM05D006339 ORTHO05D007892 1.6e-45 186.0 96 92.7
CiPaw.03G001600 Carya illinoinensis HOM05D006339 ORTHO05D007892 2.7e-45 185.3 99 91.9
Glyma.18G281300 Glycine max HOM05D006339 ORTHO05D007892 2.7e-45 185.3 99 91.9
VMungo1383G1391 Vigna mungo HOM05D006339 ORTHO05D007892 2.7e-45 185.3 99 91.9
Haze_14951 Corylus avellana HOM05D006339 ORTHO05D007892 4.6e-45 184.5 122 79.5
Lj1g0006115 Lotus japonicus HOM05D006339 ORTHO05D007892 4.6e-45 184.5 96 92.7
Phvul.008G019700 Phaseolus vulgaris HOM05D006339 ORTHO05D007892 6.1e-45 184.1 99 90.9
Thecc.04G048000 Theobroma cacao HOM05D006339 ORTHO05D007892 6.1e-45 184.1 99 90.9
Ca_08200_v3 Cicer arietinum L. HOM05D006339 ORTHO05D007892 1.0e-44 183.3 95 93.7
Potri.001G429200 Populus trichocarpa HOM05D006339 ORTHO05D007892 1.0e-44 183.3 100 92.0
Potri.001G435300 Populus trichocarpa HOM05D006339 ORTHO05D007892 1.0e-44 183.3 100 92.0
GSVIVG01032984001 Vitis vinifera HOM05D006339 ORTHO05D007892 1.4e-44 183.0 99 90.9
Duzib264G0796 Durio zibethinus HOM05D006339 ORTHO05D007892 1.8e-44 182.6 99 89.9
Cpa.g.sc70.64 Carica papaya HOM05D006339 ORTHO05D007892 3.0e-44 181.8 96 91.7
Manes.11G076700 Manihot esculenta HOM05D006339 ORTHO05D007892 3.0e-44 181.8 115 80.9
Psat3g093240 Pisum sativum HOM05D006339 ORTHO05D007892 3.0e-44 181.8 95 92.6
Dinv33278 Davidia involucrata HOM05D006339 ORTHO05D007892 3.9e-44 181.4 99 89.9
TPR.G15412 Trifolium pratense HOM05D006339 ORTHO05D007892 3.9e-44 181.4 95 92.6
Medtr7g084140 Medicago truncatula HOM05D006339 ORTHO05D007892 8.8e-44 180.3 95 91.6
Actinidia09846 Actinidia chinensis HOM05D006339 ORTHO05D007892 1.5e-43 179.5 95 91.6
ATR0582G044 Amborella trichopoda HOM05D006339 ORTHO05D007892 1.5e-43 179.5 96 90.6
DCAR_014468 Daucus carota HOM05D006339 ORTHO05D007892 2.0e-43 179.1 94 92.6
Lsat_1_v5_gn_0_22620 Lactuca sativa HOM05D006339 ORTHO05D007892 2.0e-43 179.1 99 88.9
CSS0020777 Camellia sinensis var. sinensis HOM05D006339 ORTHO05D007892 2.5e-43 178.7 93 93.5
Nn3g16274 Nelumbo nucifera HOM05D006339 ORTHO05D007892 3.3e-43 178.3 96 90.6
Potri.011G139300 Populus trichocarpa HOM05D006339 ORTHO05D007892 3.3e-43 178.3 100 90.0
COL.COLO4_13376 Corchorus olitorius HOM05D006339 ORTHO05D007892 4.3e-43 177.9 95 90.5
Gohir.D07G240000 Gossypium hirsutum HOM05D006339 ORTHO05D007892 4.3e-43 177.9 92 93.5
Gorai.001G276200 Gossypium raimondii HOM05D006339 ORTHO05D007892 4.3e-43 177.9 92 93.5
arahy.Tifrunner.gnm1.ann1.RW2HW9 Arachis hypogaea HOM05D006339 ORTHO05D007892 5.7e-43 177.6 99 87.9
arahy.Tifrunner.gnm1.ann1.WXC194 Arachis hypogaea HOM05D006339 ORTHO05D007892 5.7e-43 177.6 99 87.9
CDE06G1050 Ceratophyllum demersum HOM05D006339 ORTHO05D007892 7.4e-43 177.2 114 76.3
ECA246G5025 Erigeron canadensis HOM05D006339 ORTHO05D007892 7.4e-43 177.2 96 90.6
RcHm_v2.0_Chr2g0176551 Rosa chinensis HOM05D006339 ORTHO05D007892 7.4e-43 177.2 108 79.6
Eucgr.G01929 Eucalyptus grandis HOM05D006339 ORTHO05D007892 9.7e-43 176.8 96 89.6
Rhsim12G0052300 Rhododendron simsii HOM05D006339 ORTHO05D007892 1.3e-42 176.4 94 91.5
Gohir.A07G232800 Gossypium hirsutum HOM05D006339 ORTHO05D007892 1.7e-42 176.0 92 92.4
HanXRQChr17g0550981 Helianthus annuus HOM05D006339 ORTHO05D007892 1.7e-42 176.0 94 91.5
Hma1.2p1_1389F.1_g280000 Hydrangea macrophylla HOM05D006339 ORTHO05D007892 1.7e-42 176.0 95 89.5
MELO3C025063.2 Cucumis melo HOM05D006339 ORTHO05D007892 2.2e-42 175.6 99 86.9
CsaV3_5G020130 Cucumis sativus L. HOM05D006339 ORTHO05D007892 2.2e-42 175.6 99 86.9
vmacro01209 Vaccinium macrocarpon HOM05D006339 ORTHO05D007892 2.2e-42 175.6 95 90.5
HPP92_023026 Vanilla planifolia HOM05D006339 ORTHO05D007892 2.2e-42 175.6 94 90.4
ClCG01G008260 Citrullus lanatus HOM05D006339 ORTHO05D007892 2.8e-42 175.3 96 88.5
Thhalv10017294m.g Eutrema salsugineum HOM05D006339 ORTHO05D007892 2.8e-42 175.3 102 83.3
Nitab4.5_0000898g0050 Nicotiana tabacum HOM05D006339 ORTHO05D007892 2.8e-42 175.3 98 87.8
SalBow7G3927 Salvia bowleyana HOM05D006339 ORTHO05D007892 2.8e-42 175.3 93 92.5
unitig_0.g1640 Utricularia gibba HOM05D006339 ORTHO05D007892 2.8e-42 175.3 94 90.4
Sc07g0003800 Simmondsia chinensis HOM05D006339 ORTHO05D007892 3.7e-42 174.9 95 90.5
TAR622G0978 Trochodendron aralioides HOM05D006339 ORTHO05D007892 3.7e-42 174.9 96 87.5
Atru.chr6.2696 Acer truncatum HOM05D006339 ORTHO05D007892 6.3e-42 174.1 96 88.5
Cc07_g01310 Coffea canephora HOM05D006339 ORTHO05D007892 6.3e-42 174.1 95 88.4
Migut.F00012 Erythranthe guttata HOM05D006339 ORTHO05D007892 6.3e-42 174.1 93 91.4
PGR042G1393 Punica granatum HOM05D006339 ORTHO05D007892 6.3e-42 174.1 96 86.5
Sed0000694 Sechium edule HOM05D006339 ORTHO05D007892 6.3e-42 174.1 90 93.3
THA.LOC104802366 Tarenaya hassleriana HOM05D006339 ORTHO05D007892 6.3e-42 174.1 99 85.9
Sed0011617 Sechium edule HOM05D006339 ORTHO05D007892 1.1e-41 173.3 96 87.5
Hund04181 Selenicereus undatus HOM05D006339 ORTHO05D007892 1.1e-41 173.3 96 87.5
PSO017G1553 Papaver somniferum HOM05D006339 ORTHO05D007892 1.4e-41 172.9 94 89.4
PSO478G5314 Papaver somniferum HOM05D006339 ORTHO05D007892 1.4e-41 172.9 94 89.4
AL4G35130 Arabidopsis lyrata HOM05D006339 ORTHO05D007892 1.8e-41 172.6 94 88.3
Solyc09g091980.3 Solanum lycopersicum HOM05D006339 ORTHO05D007892 1.8e-41 172.6 96 88.5
PGSC0003DMG401031287 Solanum tuberosum HOM05D006339 ORTHO05D007892 1.8e-41 172.6 96 88.5
Aqoxy5G03118 Aquilegia oxysepala HOM05D006339 ORTHO05D007892 2.4e-41 172.2 96 87.5
Carub.0004s2010 Capsella rubella HOM05D006339 ORTHO05D007892 2.4e-41 172.2 94 88.3
CAN.G1635.5 Capsicum annuum HOM05D006339 ORTHO05D007892 2.4e-41 172.2 96 88.5
Lalb_Chr01g0015281 Lupinus albus HOM05D006339 ORTHO05D007892 2.4e-41 172.2 101 84.2
TWI81G1088 Tripterygium wilfordii HOM05D006339 ORTHO05D007892 2.4e-41 172.2 96 89.6
Sopen09g034880 Solanum pennellii HOM05D006339 ORTHO05D007892 3.1e-41 171.8 96 88.5
Sp4g20450 Schrenkiella parvula HOM05D006339 ORTHO05D007892 4.1e-41 171.4 94 86.2
MBI10_g42609_MAGBIO Magnolia biondii HOM05D006339 ORTHO05D007892 5.3e-41 171.0 90 92.2
Os11g0525800 Oryza sativa ssp. japonica HOM05D006339 ORTHO05D007892 5.3e-41 171.0 93 88.2
AUR62017432 Chenopodium quinoa HOM05D006339 ORTHO05D007892 6.9e-41 170.6 96 86.5
AUR62037822 Chenopodium quinoa HOM05D006339 ORTHO05D007892 6.9e-41 170.6 96 86.5
Peaxi162Scf00047g00520 Petunia axillaris HOM05D006339 ORTHO05D007892 6.9e-41 170.6 93 89.2
Prupe.3G313900 Prunus persica HOM05D006339 ORTHO05D007892 6.9e-41 170.6 90 91.1
A05p07900 Brassica napus HOM05D006339 ORTHO05D007892 9.1e-41 170.2 94 87.2
AT2G38130 Arabidopsis thaliana HOM05D006339 ORTHO05D007892 1.2e-40 169.9 94 86.2
CARHR132720 Cardamine hirsuta HOM05D006339 ORTHO05D007892 1.2e-40 169.9 95 85.3
MD09G1002300 Malus domestica HOM05D006339 ORTHO05D007892 1.2e-40 169.9 92 89.1
Aa31LG3G16140 Aethionema arabicum HOM05D006339 ORTHO05D007892 2.0e-40 169.1 90 92.2
CDE02G1951 Ceratophyllum demersum HOM05D006339 ORTHO05D007892 2.0e-40 169.1 96 85.4
C04p09550 Brassica napus HOM05D006339 ORTHO05D007892 2.6e-40 168.7 94 86.2
BolC4t22561H Brassica oleracea HOM05D006339 ORTHO05D007892 2.6e-40 168.7 94 86.2
BraA05t19756Z Brassica rapa HOM05D006339 ORTHO05D007892 2.6e-40 168.7 94 86.2
Duzib187G1607 Durio zibethinus HOM05D006339 ORTHO05D007892 2.6e-40 168.7 95 87.4
SGA_v2.0_scaffold44G16955 Striga asiatica HOM05D006339 ORTHO05D007892 7.7e-40 167.2 90 88.9
MSTRG.16761 Avicennia marina HOM05D006339 ORTHO05D007892 1.0e-39 166.8 93 88.2
FAN05G1930 Fragaria x ananassa HOM05D006339 ORTHO05D007892 1.3e-39 166.4 92 87.0
FvH4_6g54330 Fragaria vesca HOM05D006339 ORTHO05D007892 1.1e-38 163.3 92 84.8
Zm00001eb198110 Zea mays HOM05D006339 ORTHO05D007892 1.4e-38 162.9 102 80.4
Mapoly0127s0038 Marchantia polymorpha HOM05D006339 ORTHO05D007892 1.9e-38 162.5 93 82.8
Nitab4.5_0001416g0050 Nicotiana tabacum HOM05D006339 ORTHO05D007892 2.6e-35 152.1 98 79.6
Pp3c21_5060 Physcomitrium patens HOM05D006339 ORTHO05D007892 2.6e-35 152.1 92 79.3
AagrBONN_evm.TU.Sc2ySwM_369.240 Anthoceros agrestis HOM05D006339 ORTHO05D007892 2.8e-34 148.7 94 77.7
Glyma.08G257200 Glycine max HOM05D006339 ORTHO05D007892 3.7e-34 148.3 86 88.4
Pp3c18_17900 Physcomitrium patens HOM05D006339 ORTHO05D007892 3.7e-34 148.3 92 77.2
SMO266G0054 Selaginella moellendorffii HOM05D006339 ORTHO05D007892 2.4e-33 145.6 93 75.3
CBR_g48357 Chara braunii HOM05D006339 ORTHO05D007892 2.5e-30 135.6 90 74.4
Hma1.2p1_1389F.1_g280010 Hydrangea macrophylla HOM05D006339 ORTHO05D007892 2.5e-30 135.6 95 74.7
Zm00001eb113280 Zea mays HOM05D006339 ORTHO05D007892 2.5e-30 135.6 73 89.0
EL10Ac6g13407 Beta vulgaris HOM05D006339 ORTHO05D007892 1.1e-27 126.7 69 91.3
PRCOL_00001995 Prasinoderma coloniale HOM05D006339 ORTHO05D007892 2.8e-26 122.1 90 67.8
Cre14.g623800 Chlamydomonas reinhardtii HOM05D006339 ORTHO05D007892 5.9e-24 114.4 94 62.8
Lj7C617G17 Lonicera japonica HOM05D006339 ORTHO05D007892 2.8e-18 95.5 50 94.0
C03p24870 Brassica napus HOM05D006339 ORTHO05D007892 4.8e-18 94.7 82 62.2
BolC3t14877H Brassica oleracea HOM05D006339 ORTHO05D007892 4.8e-18 94.7 82 62.2
MCO12G247 Micromonas commoda HOM05D006339 ORTHO05D007892 1.1e-17 93.6 79 59.5
Haze_27130 Corylus avellana HOM05D006339 ORTHO05D007892 1.8e-17 92.8 79 58.2
Ah.02g128820 Amaranthus hybridus HOM05D006339 ORTHO05D007892 7.7e-16 87.4 48 83.3
MD05G1042000 Malus domestica HOM05D006339 ORTHO05D007892 1.7e-15 86.3 48 79.2
Potri.001G433800 Populus trichocarpa HOM05D006339 ORTHO05D007892 3.8e-15 85.1 47 89.4
FAN02G3444 Fragaria x ananassa HOM05D006339 ORTHO05D007892 8.5e-15 84.0 49 87.8
Potri.001G425800 Populus trichocarpa HOM05D006339 ORTHO05D007892 8.5e-15 84.0 47 87.2
Potri.001G432400 Populus trichocarpa HOM05D006339 ORTHO05D007892 1.1e-14 83.6 46 89.1
Sabra16G0289600 Salix brachista HOM05D006339 ORTHO05D007892 1.1e-14 83.6 46 89.1
SEGI_41446 Sequoiadendron giganteum HOM05D006339 ORTHO05D007892 1.1e-14 83.6 45 86.7
Sabra11G0125200 Salix brachista HOM05D006339 ORTHO05D007892 1.2e-13 80.1 47 83.0
Oeu048678.3 Olea europaea HOM05D006339 ORTHO05D007892 1.0e-07 60.5 94 40.4
Lj7C617T19 Lonicera japonica HOM05D006339 ORTHO05D007892 4.2e-06 55.1 26 88.5
MBI10_g46354_MAGBIO Magnolia biondii HOM05D006339 ORTHO05D007892 4.2e-06 55.1 26 88.5
MBI10_g47709_MAGBIO Magnolia biondii HOM05D006339 ORTHO05D007892 4.2e-06 55.1 26 88.5


User provided reference genes

Program Settings