Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 5.8e-110 401.0 213 100.0
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 3.1e-87 325.5 215 88.4
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 3.6e-51 205.7 213 62.0
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 5.4e-39 165.2 216 53.7
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.0e-38 163.3 187 60.4
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 3.5e-38 162.5 230 48.7
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 2.2e-37 159.8 226 48.2
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 8.5e-37 157.9 223 47.5
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 7.2e-36 154.8 241 48.1
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 7.2e-36 154.8 222 49.5
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 2.1e-35 153.3 223 50.2
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.7e-35 152.9 225 49.3
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.3e-34 149.8 220 47.3
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 6.8e-34 148.3 218 49.5
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.2e-33 147.5 216 47.7
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 1.5e-33 147.1 210 48.1
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 2.0e-33 146.7 211 48.8
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 2.6e-33 146.4 222 50.9
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 3.4e-33 146.0 211 50.2
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 7.5e-33 144.8 222 47.7
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 1.3e-32 144.1 211 48.3
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 2.8e-32 142.9 211 48.3
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.8e-32 142.9 219 48.9
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 3.7e-32 142.5 225 48.4
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 3.7e-32 142.5 219 47.0
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 3.7e-32 142.5 233 45.5
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 6.3e-32 141.7 235 47.2
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 6.3e-32 141.7 223 46.6
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 8.3e-32 141.4 203 48.3
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.4e-31 140.6 211 46.4
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.4e-31 140.6 207 45.9
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 4.1e-31 139.0 212 45.3
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 5.4e-31 138.7 214 43.9
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 7.0e-31 138.3 215 46.0
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 9.2e-31 137.9 209 46.9
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.0e-30 136.7 214 48.6
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.0e-30 136.7 219 47.9
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.7e-30 136.3 210 45.7
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 7.7e-30 134.8 223 44.4
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.0e-29 134.4 219 43.4
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.7e-29 133.7 219 43.4
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.7e-29 133.7 223 47.1
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.3e-29 133.3 218 44.5
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 2.3e-29 133.3 205 44.9
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 3.8e-29 132.5 217 47.0
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 5.0e-29 132.1 232 46.1
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 5.0e-29 132.1 219 43.4
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 6.6e-29 131.7 221 44.3
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.1e-28 131.0 221 47.5
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.5e-28 130.6 224 43.3
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.9e-28 130.2 239 45.2
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 1.9e-28 130.2 216 44.9
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 2.5e-28 129.8 215 45.1
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.5e-28 129.8 211 41.7
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 2.5e-28 129.8 224 42.0
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 3.3e-28 129.4 215 45.1
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 9.5e-28 127.9 211 45.5
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 9.5e-28 127.9 219 44.3
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 9.5e-28 127.9 220 44.1
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.2e-27 127.5 208 41.8
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 3.6e-27 125.9 219 42.9
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 4.7e-27 125.6 220 43.2
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 8.0e-27 124.8 219 42.5
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 8.0e-27 124.8 219 42.0
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 8.0e-27 124.8 223 42.2
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 8.0e-27 124.8 225 41.8
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.0e-26 124.4 220 43.6
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.0e-26 124.4 223 43.9
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.0e-26 124.4 204 45.6
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.4e-26 124.0 218 44.5
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 1.4e-26 124.0 213 42.7
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.4e-26 124.0 213 41.8
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 2.3e-26 123.2 220 43.6
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 3.0e-26 122.9 198 46.5
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 3.0e-26 122.9 231 39.8
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 4.0e-26 122.5 212 43.4
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 5.2e-26 122.1 227 41.0
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 8.9e-26 121.3 222 41.9
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.2e-25 120.9 212 43.9
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.5e-25 120.6 215 43.7
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.5e-25 120.6 215 42.8
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.6e-25 119.8 219 41.6
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 2.6e-25 119.8 214 42.1
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.6e-25 119.8 239 38.5
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 5.7e-25 118.6 212 40.6
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 7.5e-25 118.2 219 41.1
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 7.5e-25 118.2 219 41.1
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 7.5e-25 118.2 219 41.1
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 7.5e-25 118.2 219 42.5
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 9.8e-25 117.9 222 43.2
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 1.3e-24 117.5 215 42.8
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.3e-24 117.5 226 42.5
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.7e-24 117.1 200 45.0
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 3.7e-24 115.9 196 45.4
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 3.7e-24 115.9 214 44.9
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-23 114.4 207 42.5
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.4e-23 114.0 208 44.2
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.8e-23 113.6 227 41.4
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 1.8e-23 113.6 235 40.4
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.4e-23 113.2 196 43.4
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.2e-23 112.8 213 41.3
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 7.0e-23 111.7 203 39.9
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 9.2e-23 111.3 206 41.7
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.2e-22 110.9 250 38.4
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.6e-22 110.5 196 42.9
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.6e-22 110.5 207 42.0
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 2.7e-22 109.8 203 42.4
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 2.7e-22 109.8 203 42.4
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 2.7e-22 109.8 203 42.4
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 3.5e-22 109.4 213 36.2
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 7.8e-22 108.2 200 43.0
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 7.8e-22 108.2 214 42.5
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 1.0e-21 107.8 204 41.2
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 3.9e-21 105.9 237 38.4
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.6e-21 105.1 206 40.3
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.6e-21 105.1 209 41.1
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 6.6e-21 105.1 209 41.1
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 6.6e-21 105.1 215 41.4
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 8.6e-21 104.8 229 39.7
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.1e-20 104.4 208 37.0
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.5e-20 104.0 172 46.5
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 1.5e-20 104.0 216 40.7
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.9e-20 103.6 209 40.7
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.9e-20 103.6 216 38.9
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.5e-20 103.2 205 41.5
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.3e-20 102.8 209 38.3
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.3e-20 102.8 209 38.3
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 4.3e-20 102.4 215 39.1
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 4.3e-20 102.4 231 39.0
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 7.3e-20 101.7 226 38.1
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 9.5e-20 101.3 216 38.9
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-19 100.9 177 41.8
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.2e-19 100.9 177 41.8
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 2.8e-19 99.8 187 42.2
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 3.6e-19 99.4 177 41.8
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 8.0e-19 98.2 220 35.9
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 1.0e-18 97.8 204 39.2
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.8e-18 97.1 209 39.2
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 3.1e-18 96.3 210 40.0
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 4.0e-18 95.9 204 38.2
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 1.5e-17 94.0 177 41.8
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 1.5e-17 94.0 177 41.8
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 2.0e-17 93.6 210 41.0
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.0e-17 93.6 219 37.4
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 3.4e-17 92.8 181 40.9
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.7e-16 90.5 226 35.8
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 2.9e-16 89.7 155 41.9
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 1.4e-15 87.4 173 39.3
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 1.9e-15 87.0 92 55.4
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 2.4e-15 86.7 219 32.9
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 4.1e-15 85.9 226 34.5
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 7.0e-15 85.1 191 37.7
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.2e-14 84.3 204 33.8
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.0e-14 83.6 225 33.8
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 2.0e-14 83.6 200 36.5
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.0e-14 83.6 207 35.3
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 4.6e-14 82.4 224 32.6
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 7.8e-14 81.6 191 36.6
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 8.6e-13 78.2 211 31.3
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 3.3e-12 76.3 191 38.2
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.6e-11 73.9 137 40.1
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 4.7e-11 72.4 72 58.3
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.1e-10 71.2 196 35.2
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 1.4e-10 70.9 205 31.2
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 1.4e-10 70.9 188 34.6
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.3e-10 70.1 75 57.3
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 1.2e-09 67.8 213 34.7
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 2.6e-09 66.6 217 30.4
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 4.4e-09 65.9 209 31.6
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 5.8e-09 65.5 77 50.6
EL10Ac6g13908 Beta vulgaris HOM05D029470 ORTHO05D026515 2.2e-08 63.5 217 31.8
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 6.4e-08 62.0 211 34.1
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 4.1e-07 59.3 215 28.8
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 2.1e-06 57.0 170 33.5


User provided reference genes

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