Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 4.2e-104 381.3 188 100.0
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 1.3e-84 316.6 162 96.9
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 5.5e-64 248.1 179 70.4
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 6.1e-63 244.6 190 68.9
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 1.0e-62 243.8 187 66.8
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 2.3e-62 242.7 190 67.4
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 6.8e-62 241.1 187 68.4
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 1.2e-61 240.4 170 71.2
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 2.6e-61 239.2 179 66.5
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 1.3e-60 236.9 187 63.1
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 2.4e-59 232.6 183 63.4
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 9.2e-59 230.7 184 66.3
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 2.9e-57 225.7 188 63.3
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 5.6e-56 221.5 187 61.0
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.2e-55 220.3 176 67.0
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 2.1e-55 219.5 176 67.0
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 2.1e-55 219.5 190 57.9
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.7e-55 218.4 187 61.5
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.7e-55 218.4 187 61.5
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.7e-55 218.4 187 60.4
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 4.7e-55 218.4 176 64.2
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 8.0e-55 217.6 187 59.4
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.8e-54 216.5 186 59.1
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 2.3e-54 216.1 186 59.1
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 3.0e-54 215.7 190 61.1
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 8.9e-54 214.2 148 70.3
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 3.4e-53 212.2 190 60.5
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 5.7e-53 211.5 190 60.5
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 5.7e-53 211.5 184 62.0
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 7.5e-53 211.1 201 59.7
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 2.2e-52 209.5 153 66.7
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 2.9e-52 209.1 141 74.5
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 4.9e-52 208.4 125 78.4
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 6.4e-52 208.0 125 78.4
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 1.4e-51 206.8 141 70.9
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 2.4e-51 206.1 126 77.0
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 4.1e-51 205.3 145 69.0
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 4.1e-51 205.3 141 70.2
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 5.4e-51 204.9 140 69.3
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 5.4e-51 204.9 132 72.7
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 9.2e-51 204.1 174 59.8
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 1.6e-50 203.4 140 70.0
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 1.6e-50 203.4 159 62.9
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 2.0e-50 203.0 177 60.5
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 2.7e-50 202.6 178 60.7
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 5.9e-50 201.4 149 65.8
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 7.8e-50 201.1 140 70.0
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 1.3e-49 200.3 158 63.3
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 3.0e-49 199.1 135 71.1
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 3.0e-49 199.1 139 69.1
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 5.0e-49 198.4 152 67.1
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 5.0e-49 198.4 116 88.8
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 1.2e-47 193.7 143 63.6
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 3.6e-47 192.2 120 71.7
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 3.6e-47 192.2 112 79.5
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 4.7e-47 191.8 141 68.1
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 1.1e-46 190.7 147 63.9
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.3e-46 189.5 120 70.8
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 4.0e-46 188.7 155 62.6
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 8.9e-46 187.6 180 55.0
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 8.9e-46 187.6 180 55.0
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 8.9e-46 187.6 189 56.6
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 8.9e-46 187.6 147 63.3
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 1.5e-45 186.8 182 57.1
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 1.5e-45 186.8 146 65.8
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 2.0e-45 186.4 151 61.6
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 2.6e-45 186.0 132 66.7
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 3.4e-45 185.7 175 60.6
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 4.4e-45 185.3 132 68.2
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 4.4e-45 185.3 138 65.9
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 5.8e-45 184.9 185 53.5
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 7.5e-45 184.5 138 65.2
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 7.5e-45 184.5 138 65.9
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 7.5e-45 184.5 138 65.9
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 7.5e-45 184.5 148 61.5
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 7.5e-45 184.5 163 59.5
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 1.3e-44 183.7 192 52.6
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 1.3e-44 183.7 123 74.8
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 1.3e-44 183.7 140 65.7
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 2.2e-44 183.0 134 67.9
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 2.2e-44 183.0 134 67.9
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 2.2e-44 183.0 147 62.6
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 2.9e-44 182.6 139 63.3
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 2.9e-44 182.6 118 74.6
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 3.7e-44 182.2 141 64.5
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 3.7e-44 182.2 180 55.0
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 3.7e-44 182.2 187 52.9
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 3.7e-44 182.2 131 65.6
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 1.9e-43 179.9 135 65.2
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 1.9e-43 179.9 194 51.5
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 1.9e-43 179.9 195 51.3
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 2.4e-43 179.5 163 59.5
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 4.1e-43 178.7 152 61.8
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 7.0e-43 177.9 162 55.6
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 7.0e-43 177.9 137 65.7
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 1.2e-42 177.2 132 67.4
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 1.2e-42 177.2 132 65.9
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.0e-42 176.4 126 70.6
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 3.5e-42 175.6 137 62.8
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 3.0e-41 172.6 115 70.4
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 1.1e-40 170.6 127 63.8
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 1.5e-40 170.2 138 64.5
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 1.9e-40 169.9 138 62.3
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 2.8e-39 166.0 150 60.0
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 8.9e-38 161.0 127 63.0
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 3.7e-36 155.6 130 59.2
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 1.1e-35 154.1 90 81.1
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 5.4e-35 151.8 129 62.8
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 9.2e-35 151.0 158 51.9
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 6.0e-34 148.3 153 52.3
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 5.1e-33 145.2 115 64.3
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 6.6e-33 144.8 145 52.4
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 8.6e-33 144.4 109 56.9
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.5e-32 143.7 100 66.0
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 4.7e-31 138.7 138 48.6
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 2.0e-29 133.3 156 45.5
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 4.4e-29 132.1 111 55.9
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 3.0e-25 119.4 123 46.3
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 1.3e-17 94.0 137 40.9
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 1.9e-16 90.1 97 52.6
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.3e-15 87.4 57 73.7
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 1.1e-14 84.3 98 41.8
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 7.9e-10 68.2 61 54.1
Manes.01G158400 Manihot esculenta HOM05D006312 ORTHO05D007843 4.8e-07 58.9 65 56.9
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 4.8e-07 58.9 81 42.0


User provided reference genes

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