Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007115 Carpinus fangiana HOM05D007735 ORTHO05D009638 3.4e-77 291.6 146 100.0
QL06p053348 Quercus lobata HOM05D007735 ORTHO05D009638 2.5e-40 169.1 143 69.9
Manes.01G157700 Manihot esculenta HOM05D007735 ORTHO05D009638 2.8e-31 139.0 143 56.6
Prupe.7G187700 Prunus persica HOM05D007735 ORTHO05D009638 3.1e-30 135.6 150 59.3
Thecc.01G001800 Theobroma cacao HOM05D007735 ORTHO05D009638 5.3e-30 134.8 154 55.8
Cc07_g12240 Coffea canephora HOM05D007735 ORTHO05D009638 2.0e-29 132.9 147 53.1
Sabra16G0309000 Salix brachista HOM05D007735 ORTHO05D009638 2.2e-28 129.4 118 61.0
TAR381G1223 Trochodendron aralioides HOM05D007735 ORTHO05D009638 2.2e-28 129.4 143 56.6
Manes.02G117000 Manihot esculenta HOM05D007735 ORTHO05D009638 3.8e-28 128.6 137 56.2
Nn5g31061 Nelumbo nucifera HOM05D007735 ORTHO05D009638 4.2e-27 125.2 145 53.1
CSS0016261 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 7.9e-26 120.9 141 52.5
Potri.001G456700 Populus trichocarpa HOM05D007735 ORTHO05D009638 5.1e-25 118.2 117 60.7
Potri.011G145200 Populus trichocarpa HOM05D007735 ORTHO05D009638 6.7e-25 117.9 139 53.2
Glyma.16G114400 Glycine max HOM05D007735 ORTHO05D009638 9.7e-24 114.0 137 51.1
Sc03g0004120 Simmondsia chinensis HOM05D007735 ORTHO05D009638 2.8e-23 112.5 140 45.7
Sabra11G0130300 Salix brachista HOM05D007735 ORTHO05D009638 3.7e-23 112.1 128 54.7
Peaxi162Scf00918g00052 Petunia axillaris HOM05D007735 ORTHO05D009638 4.8e-23 111.7 140 50.0
Eucgr.J02566 Eucalyptus grandis HOM05D007735 ORTHO05D009638 6.3e-23 111.3 155 49.7
FAN23G3070 Fragaria x ananassa HOM05D007735 ORTHO05D009638 1.4e-22 110.2 135 51.9
Sopen02g026900 Solanum pennellii HOM05D007735 ORTHO05D009638 2.4e-22 109.4 143 49.0
PGSC0003DMG400013637 Solanum tuberosum HOM05D007735 ORTHO05D009638 2.4e-22 109.4 143 47.6
RcHm_v2.0_Chr2g0096741 Rosa chinensis HOM05D007735 ORTHO05D009638 3.1e-22 109.0 135 54.1
Glyma.09G195900 Glycine max HOM05D007735 ORTHO05D009638 5.3e-22 108.2 137 49.6
Phvul.002G119100 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 5.3e-22 108.2 137 54.0
Solyc02g082240.1 Solanum lycopersicum HOM05D007735 ORTHO05D009638 9.1e-22 107.5 152 46.1
FAN28G1635 Fragaria x ananassa HOM05D007735 ORTHO05D009638 1.2e-21 107.1 135 50.4
FvH4_1g09950 Fragaria vesca HOM05D007735 ORTHO05D009638 1.5e-21 106.7 135 50.4
FAN19G1654 Fragaria x ananassa HOM05D007735 ORTHO05D009638 1.5e-21 106.7 135 50.4
CSS0025501 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 2.6e-21 105.9 132 50.8
Glyma.01G156500 Glycine max HOM05D007735 ORTHO05D009638 4.5e-21 105.1 132 52.3
Nitab4.5_0006309g0010 Nicotiana tabacum HOM05D007735 ORTHO05D009638 1.0e-20 104.0 146 45.9
Nitab4.5_0000855g0160 Nicotiana tabacum HOM05D007735 ORTHO05D009638 2.2e-20 102.8 141 47.5
Oeu043409.2 Olea europaea HOM05D007735 ORTHO05D009638 2.2e-20 102.8 135 43.7
Medtr8g072610 Medicago truncatula HOM05D007735 ORTHO05D009638 8.5e-20 100.9 132 50.8
Oeu045753.2 Olea europaea HOM05D007735 ORTHO05D009638 1.1e-19 100.5 135 44.4
VMungo1215G0699 Vigna mungo HOM05D007735 ORTHO05D009638 1.1e-19 100.5 134 53.0
Aqoxy6G03024 Aquilegia oxysepala HOM05D007735 ORTHO05D009638 2.5e-19 99.4 142 48.6
ECA246G0225 Erigeron canadensis HOM05D007735 ORTHO05D009638 2.5e-19 99.4 138 48.6
DCAR_014121 Daucus carota HOM05D007735 ORTHO05D009638 4.2e-19 98.6 141 48.2
DCAR_014122 Daucus carota HOM05D007735 ORTHO05D009638 4.2e-19 98.6 141 48.2
FAN23G2983 Fragaria x ananassa HOM05D007735 ORTHO05D009638 4.2e-19 98.6 127 50.4
Gohir.D04G020900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 9.4e-19 97.4 123 53.7
Glyma.11G088300 Glycine max HOM05D007735 ORTHO05D009638 2.1e-18 96.3 133 49.6
TPR.G19311 Trifolium pratense HOM05D007735 ORTHO05D009638 2.1e-18 96.3 132 48.5
FAN26G0974 Fragaria x ananassa HOM05D007735 ORTHO05D009638 2.7e-18 95.9 127 49.6
Gohir.A05G393900 Gossypium hirsutum HOM05D007735 ORTHO05D009638 8.0e-18 94.4 124 53.2
Gorai.012G025100 Gossypium raimondii HOM05D007735 ORTHO05D009638 8.0e-18 94.4 124 54.0
Lalb_Chr16g0380221 Lupinus albus HOM05D007735 ORTHO05D009638 1.0e-17 94.0 132 45.5
Nitab4.5_0004448g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 1.0e-17 94.0 142 45.1
Psat4g107200 Pisum sativum HOM05D007735 ORTHO05D009638 1.0e-17 94.0 147 45.6
Lsat_1_v5_gn_2_74220 Lactuca sativa HOM05D007735 ORTHO05D009638 1.8e-17 93.2 123 52.8
Nn6g31607 Nelumbo nucifera HOM05D007735 ORTHO05D009638 3.9e-17 92.0 122 46.7
Lalb_Chr05g0229481 Lupinus albus HOM05D007735 ORTHO05D009638 5.2e-17 91.7 137 46.0
SGA_v2.0_scaffold2G00933 Striga asiatica HOM05D007735 ORTHO05D009638 5.2e-17 91.7 134 42.5
CiPaw.07G000500 Carya illinoinensis HOM05D007735 ORTHO05D009638 1.1e-16 90.5 132 50.8
Cpa.g.sc6.350 Carica papaya HOM05D007735 ORTHO05D009638 1.5e-16 90.1 124 51.6
Lsat_1_v5_gn_3_69161 Lactuca sativa HOM05D007735 ORTHO05D009638 1.5e-16 90.1 138 44.2
Lalb_Chr09g0324871 Lupinus albus HOM05D007735 ORTHO05D009638 1.5e-16 90.1 132 45.5
VMungo0251G0553 Vigna mungo HOM05D007735 ORTHO05D009638 1.5e-16 90.1 137 45.3
COL.COLO4_22568 Corchorus olitorius HOM05D007735 ORTHO05D009638 2.6e-16 89.4 139 50.4
Eucgr.I02199 Eucalyptus grandis HOM05D007735 ORTHO05D009638 3.3e-16 89.0 138 42.8
Lj2g0017807 Lotus japonicus HOM05D007735 ORTHO05D009638 4.4e-16 88.6 138 47.1
LjContig00247g0020335 Lotus japonicus HOM05D007735 ORTHO05D009638 1.3e-15 87.0 132 47.7
Lalb_Chr05g0214991 Lupinus albus HOM05D007735 ORTHO05D009638 1.3e-15 87.0 141 44.0
Sed0019252 Sechium edule HOM05D007735 ORTHO05D009638 1.7e-15 86.7 120 45.8
Phvul.003G272000 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 2.8e-15 85.9 137 43.8
PGSC0003DMG400018690 Solanum tuberosum HOM05D007735 ORTHO05D009638 4.8e-15 85.1 136 42.6
Lsat_1_v5_gn_8_114121 Lactuca sativa HOM05D007735 ORTHO05D009638 6.3e-15 84.7 120 45.8
Psat2g147360 Pisum sativum HOM05D007735 ORTHO05D009638 1.1e-14 84.0 140 41.4
PGSC0003DMG400015147 Solanum tuberosum HOM05D007735 ORTHO05D009638 1.4e-14 83.6 118 44.1
TPR.G33757 Trifolium pratense HOM05D001957 ORTHO05D002015 1.8e-14 83.2 142 45.1
SGA_v2.0_scaffold108G30951 Striga asiatica HOM05D007735 ORTHO05D009638 2.4e-14 82.8 136 38.2
Medtr5g024910 Medicago truncatula HOM05D007735 ORTHO05D009638 4.1e-14 82.0 141 44.0
Lsat_1_v5_gn_8_114101 Lactuca sativa HOM05D007735 ORTHO05D009638 9.1e-14 80.9 115 47.8
Ca_25020_v3 Cicer arietinum L. HOM05D007735 ORTHO05D009638 1.2e-13 80.5 134 44.8
arahy.Tifrunner.gnm1.ann1.Q37N58 Arachis hypogaea HOM05D007735 ORTHO05D009638 1.6e-13 80.1 122 45.9
arahy.Tifrunner.gnm1.ann1.S9U9HD Arachis hypogaea HOM05D007735 ORTHO05D009638 1.6e-13 80.1 122 45.9
Haze_22869 Corylus avellana HOM05D007735 ORTHO05D009638 5.9e-13 78.2 118 48.3
Nitab4.5_0004507g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 2.9e-12 75.9 138 37.7
CsaV3_3G000130 Cucumis sativus L. HOM05D007735 ORTHO05D009638 1.5e-11 73.6 119 41.2
CsaV3_UNG155170 Cucumis sativus L. HOM05D007735 ORTHO05D009638 1.5e-11 73.6 119 41.2
CiPaw.07G132500 Carya illinoinensis HOM05D007735 ORTHO05D009638 7.2e-11 71.2 137 37.2
MELO3C013706.2 Cucumis melo HOM05D007735 ORTHO05D009638 7.2e-11 71.2 126 42.1
Nitab4.5_0000235g0170 Nicotiana tabacum HOM05D007735 ORTHO05D009638 9.4e-11 70.9 93 46.2
Migut.H02270 Erythranthe guttata HOM05D007735 ORTHO05D009638 1.4e-09 67.0 139 34.5
Atru.chr3.61 Acer truncatum HOM05D007735 ORTHO05D009638 1.8e-09 66.6 85 49.4
Migut.H02268 Erythranthe guttata HOM05D007735 ORTHO05D009638 2.3e-09 66.2 119 36.1
Nitab4.5_0000304g0050 Nicotiana tabacum HOM05D007735 ORTHO05D009638 3.3e-08 62.4 89 42.7
ClCG10G000110 Citrullus lanatus HOM05D007735 ORTHO05D009638 4.4e-08 62.0 121 42.1
ATR0605G038 Amborella trichopoda HOM05D007735 ORTHO05D009638 7.5e-08 61.2 110 44.5
Rhsim06G0002400 Rhododendron simsii HOM05D001957 ORTHO05D009638 2.2e-07 59.7 133 36.8
HPP92_018900 Vanilla planifolia HOM05D026889 ORTHO05D009638 3.1e-06 55.8 114 42.1
HPP92_018844 Vanilla planifolia HOM05D026889 ORTHO05D009638 7.0e-06 54.7 114 42.1


User provided reference genes

Program Settings