Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 2.0e-223 778.9 412 100.0
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 3.5e-204 714.9 454 86.3
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 4.9e-174 614.8 417 77.7
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 2.7e-164 582.4 410 74.6
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 1.4e-157 560.1 404 69.1
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.7e-153 546.6 402 68.9
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 8.2e-153 544.3 402 69.2
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 1.4e-152 543.5 402 68.2
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 4.1e-152 542.0 403 68.7
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 1.2e-151 540.4 410 68.5
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 4.5e-151 538.5 401 68.6
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 1.0e-150 537.3 414 68.6
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.9e-149 533.1 403 68.0
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 3.2e-149 532.3 406 66.0
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 4.4e-146 521.9 402 65.4
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.7e-145 520.0 404 66.8
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 3.7e-145 518.8 406 66.0
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 3.7e-145 518.8 408 65.7
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 6.3e-145 518.1 408 66.9
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.6e-143 512.7 402 67.7
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 3.5e-143 512.3 404 65.1
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 7.7e-143 511.1 402 64.7
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 5.0e-142 508.4 412 64.1
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 5.0e-142 508.4 412 63.3
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 6.5e-142 508.1 404 65.8
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 1.1e-141 507.3 402 65.2
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.5e-141 506.9 406 64.8
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.9e-141 506.5 401 65.1
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 3.2e-141 505.8 402 62.9
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 3.0e-139 499.2 412 62.9
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 5.2e-139 498.4 409 64.3
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 5.2e-139 498.4 402 63.7
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 6.7e-139 498.0 405 64.2
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 1.1e-138 497.3 412 62.6
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 2.0e-138 496.5 415 63.6
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 2.6e-138 496.1 402 64.4
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.4e-138 495.4 412 62.4
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 7.5e-138 494.6 403 64.5
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 9.7e-138 494.2 402 63.9
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.7e-137 493.4 435 60.0
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 2.2e-137 493.0 402 63.9
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.7e-137 492.3 412 62.1
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.7e-137 492.3 412 62.1
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 4.8e-137 491.9 405 62.7
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 6.3e-137 491.5 412 62.4
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.1e-136 489.2 412 61.9
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 9.1e-136 487.6 405 63.2
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 1.6e-135 486.9 409 62.1
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 2.6e-135 486.1 406 63.1
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 4.5e-135 485.3 398 63.8
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 8.5e-134 481.1 407 61.7
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 4.2e-133 478.8 406 63.1
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 5.5e-133 478.4 409 61.4
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 1.2e-132 477.2 401 62.8
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 1.6e-132 476.9 405 63.2
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 2.7e-132 476.1 453 57.4
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 3.6e-132 475.7 409 61.9
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 5.2e-131 471.9 403 60.5
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 5.2e-131 471.9 407 61.2
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 6.8e-131 471.5 407 61.9
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 2.0e-130 469.9 404 60.1
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 3.4e-130 469.2 402 61.2
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 7.5e-130 468.0 407 61.7
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 7.5e-130 468.0 401 61.6
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 9.8e-130 467.6 404 58.9
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.2e-129 466.5 405 60.0
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.7e-129 465.7 414 59.2
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 4.8e-129 465.3 402 60.9
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 4.8e-129 465.3 402 61.7
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 6.3e-129 464.9 404 59.7
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 8.3e-129 464.5 403 59.1
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 8.3e-129 464.5 404 59.7
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.1e-128 464.2 401 61.3
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.8e-128 463.4 405 61.2
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 5.4e-128 461.8 405 59.8
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.6e-127 460.3 407 60.7
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 3.5e-127 459.1 402 62.2
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 4.5e-127 458.8 404 59.4
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.0e-126 457.6 403 59.3
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 6.5e-126 454.9 403 58.8
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 2.1e-124 449.9 405 58.3
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.4e-123 447.2 394 61.4
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 3.8e-118 429.1 409 58.2
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 6.6e-118 428.3 415 57.3
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.6e-116 423.7 402 58.5
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 2.1e-116 423.3 398 57.3
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 8.0e-116 421.4 408 59.6
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 5.7e-114 415.2 435 54.0
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 4.9e-113 412.1 382 58.9
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.4e-112 410.6 280 70.4
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 4.1e-112 409.1 409 55.3
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 5.9e-111 405.2 409 55.7
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 2.3e-110 403.3 403 55.6
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 5.0e-110 402.1 414 51.9
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.3e-109 399.4 327 64.5
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 2.8e-108 396.4 414 51.4
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 5.8e-106 388.7 461 53.8
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.3e-105 387.5 405 52.6
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 6.4e-105 385.2 406 55.4
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 3.2e-104 382.9 406 55.2
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 4.1e-104 382.5 420 54.3
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.6e-103 380.6 406 54.7
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 1.6e-103 380.6 410 53.9
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 7.8e-103 378.3 294 64.3
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 5.0e-102 375.6 409 50.9
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 8.6e-102 374.8 454 52.0
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 2.4e-96 356.7 379 52.0
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 5.4e-96 355.5 418 50.2
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.8e-91 340.5 270 63.3
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 8.4e-89 331.6 401 44.9
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 2.4e-88 330.1 313 57.2
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 5.4e-88 328.9 417 47.7
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 3.0e-86 323.2 252 67.5
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 3.2e-80 303.1 436 43.1
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 5.4e-80 302.4 414 47.3
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 7.8e-79 298.5 413 45.0
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 4.3e-77 292.7 372 47.3
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 2.1e-71 273.9 441 40.6
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 4.0e-67 259.6 462 40.7
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.3e-65 254.6 413 39.7
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 2.1e-63 247.3 166 66.9
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 9.6e-61 238.4 268 47.0
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 6.2e-60 235.7 230 58.7
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.2e-58 231.5 311 46.6
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.7e-57 227.6 176 63.6
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 4.5e-50 203.0 155 63.9
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 2.3e-46 190.7 167 56.9
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 2.5e-45 187.2 110 78.2
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.3e-44 184.9 174 54.0
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 2.5e-40 170.6 205 51.7
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 2.6e-37 160.6 182 52.7
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 3.8e-33 146.7 185 51.4
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 3.2e-32 143.7 271 35.4
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 1.3e-28 131.7 88 71.6
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 5.2e-22 109.8 103 56.3
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 2.6e-21 107.5 78 61.5
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 9.4e-16 89.0 89 50.6
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 2.1e-15 87.8 65 63.1
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 2.3e-14 84.3 59 72.9
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.3e-14 84.3 59 72.9
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 5.2e-14 83.2 53 75.5
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 6.8e-14 82.8 111 48.6
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 6.8e-14 82.8 111 48.6
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 2.8e-12 77.4 81 49.4
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 5.4e-11 73.2 300 26.0
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.3e-06 57.8 55 56.4


User provided reference genes

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