Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 8.9e-189 663.7 394 100.0
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.9e-147 525.8 394 77.7
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 3.2e-138 495.7 397 79.3
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.0e-123 447.6 394 67.0
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 7.4e-119 431.4 346 78.9
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 5.5e-114 415.2 394 64.0
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 1.2e-113 414.1 396 64.6
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 1.6e-113 413.7 394 63.7
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.1e-113 413.3 394 63.7
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.8e-112 410.2 394 66.0
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.4e-109 400.6 394 62.2
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 2.6e-108 396.4 388 63.9
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 2.9e-107 392.9 394 59.1
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 3.8e-107 392.5 394 63.5
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 6.1e-105 385.2 397 63.0
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 1.0e-104 384.4 394 62.2
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 1.5e-103 380.6 392 59.9
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 1.5e-103 380.6 392 59.9
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 5.7e-103 378.6 400 61.2
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 1.2e-100 370.9 397 56.7
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.2e-100 370.9 388 58.5
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.2e-100 370.9 396 58.3
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 5.9e-100 368.6 396 58.6
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 1.3e-99 367.5 394 59.4
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 1.7e-99 367.1 395 59.7
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 2.2e-99 366.7 388 60.1
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 3.8e-99 365.9 395 59.7
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 3.8e-99 365.9 395 65.1
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 3.8e-99 365.9 394 54.1
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 6.5e-99 365.2 395 65.1
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 8.5e-99 364.8 395 64.6
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 2.5e-98 363.2 397 60.5
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 4.7e-97 359.0 398 60.6
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 8.0e-97 358.2 396 60.4
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.3e-96 356.7 398 53.5
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.3e-96 356.7 398 53.5
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 5.2e-96 355.5 368 62.0
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 6.7e-96 355.1 397 53.7
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.2e-95 354.4 408 57.4
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 1.7e-94 350.5 395 58.5
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 6.3e-94 348.6 398 54.8
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 6.3e-94 348.6 392 57.1
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.2e-92 344.4 392 57.7
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.0e-91 341.3 396 54.5
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 1.7e-91 340.5 395 57.5
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 8.5e-91 338.2 396 56.6
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.1e-90 337.8 395 56.2
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 1.1e-90 337.8 394 53.3
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.5e-90 337.4 399 53.1
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 2.5e-90 336.7 397 54.2
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 5.5e-90 335.5 396 57.6
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.8e-88 330.5 373 53.9
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 2.3e-88 330.1 369 61.0
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 2.3e-88 330.1 398 55.3
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 1.5e-87 327.4 402 57.2
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.2e-86 323.6 397 53.4
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 1.4e-85 320.9 394 56.6
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.8e-85 320.5 393 54.5
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 7.0e-85 318.5 393 55.7
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.7e-84 316.6 397 48.9
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 5.5e-82 308.9 366 58.2
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 1.8e-80 303.9 411 49.6
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 2.3e-80 303.5 391 51.4
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 4.9e-78 295.8 394 48.2
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 7.0e-77 292.0 357 58.0
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.7e-76 290.0 357 57.7
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 3.5e-76 289.7 397 52.6
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 7.8e-76 288.5 400 47.8
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.7e-75 287.3 397 46.9
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.9e-75 286.6 357 56.3
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 5.0e-75 285.8 411 47.7
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 6.6e-75 285.4 413 47.5
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.5e-74 284.3 399 50.6
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 3.0e-72 276.6 382 46.6
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 5.2e-72 275.8 395 50.6
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 6.8e-72 275.4 391 50.6
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 8.9e-72 275.0 397 47.9
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 8.9e-72 275.0 397 46.1
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 1.5e-71 274.2 401 48.4
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 1.5e-71 274.2 413 45.8
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 1.7e-70 270.8 412 46.1
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.7e-70 270.8 412 46.6
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 4.9e-70 269.2 406 47.3
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.1e-69 268.1 411 45.3
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 1.6e-68 264.2 407 52.6
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 1.6e-68 264.2 413 46.0
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.3e-66 256.5 400 48.2
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 6.2e-65 252.3 397 47.1
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 2.3e-64 250.4 263 52.5
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.1e-64 250.0 397 41.3
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 4.0e-64 249.6 341 57.5
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 1.2e-63 248.1 392 43.9
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.5e-63 247.7 395 46.3
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 7.0e-61 238.8 393 41.0
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 7.0e-61 238.8 393 41.0
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.5e-58 231.1 401 46.1
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.5e-58 231.1 401 46.1
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.3e-58 229.9 394 44.7
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 5.8e-55 219.2 353 49.0
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 5.4e-53 212.6 404 43.3
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 1.6e-52 211.1 330 48.2
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.5e-52 209.9 175 80.6
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 7.8e-52 208.8 397 43.3
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.3e-51 208.0 396 39.6
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 1.2e-47 194.9 395 41.3
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 2.0e-47 194.1 396 38.9
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 2.6e-47 193.7 333 39.9
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 3.8e-46 189.9 395 42.3
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 4.9e-46 189.5 395 41.5
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 4.2e-45 186.4 397 39.0
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 4.2e-45 186.4 333 39.0
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 7.1e-45 185.7 395 41.8
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.6e-44 184.5 401 43.9
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 6.0e-44 182.6 398 36.4
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.7e-43 181.0 333 42.3
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 5.6e-42 176.0 394 32.7
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 2.1e-41 174.1 380 40.8
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 1.8e-40 171.0 363 41.9
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 4.0e-40 169.9 398 38.4
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 5.3e-40 169.5 402 40.0
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 9.0e-40 168.7 399 38.1
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 8.4e-38 162.2 398 36.4
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 5.1e-35 152.9 402 36.6
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 1.1e-34 151.8 335 36.1
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 5.6e-34 149.4 330 39.1
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 7.3e-34 149.1 235 50.2
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 6.2e-33 146.0 202 50.5
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 9.0e-32 142.1 402 38.1
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 9.9e-31 138.7 330 39.1
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 4.9e-30 136.3 314 43.6
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.9e-29 134.4 349 40.1
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 7.9e-28 129.0 335 37.6
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 7.9e-28 129.0 335 37.3
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 2.3e-27 127.5 390 27.9
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 3.9e-27 126.7 390 35.4
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 3.9e-27 126.7 326 40.5
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 1.9e-26 124.4 345 35.4
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 2.8e-25 120.6 343 32.1
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 6.2e-25 119.4 246 46.3
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 2.4e-24 117.5 328 34.5
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 3.4e-23 113.6 321 33.6
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 4.5e-23 113.2 321 34.0
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 7.6e-23 112.5 175 50.3
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 4.6e-20 103.2 328 32.6
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 4.6e-20 103.2 328 32.6
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.9e-18 97.8 396 31.1
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 9.6e-18 95.5 315 31.7
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 4.8e-17 93.2 306 29.4
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 2.4e-16 90.9 341 32.0
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 3.4e-15 87.0 341 31.7
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.3e-14 85.1 174 37.9
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 4.9e-14 83.2 319 33.9
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 3.2e-13 80.5 319 34.2
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 5.1e-11 73.2 394 28.9
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 3.3e-10 70.5 221 39.4
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 4.8e-09 66.6 392 32.4
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 9.0e-08 62.4 327 34.9
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.0e-07 61.2 149 45.6
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 3.4e-07 60.5 327 34.3
Carub.0008s2852 Capsella rubella HOM05D023070 ORTHO05D023654 5.9e-07 59.7 106 48.1
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 7.7e-07 59.3 326 34.0
Os06g0728500 Oryza sativa ssp. japonica HOM05D060560 ORTHO05D005048 7.7e-07 59.3 419 27.4
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 1.7e-06 58.2 220 33.6
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 1.7e-06 58.2 220 33.6
Sp2g30690 Schrenkiella parvula HOM05D023070 ORTHO05D023654 3.8e-06 57.0 127 47.2


User provided reference genes

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