Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 0.0e+00 1723.8 892 100.0
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 0.0e+00 1597.0 881 94.9
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 0.0e+00 1338.9 896 78.8
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 0.0e+00 1294.3 892 77.0
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 0.0e+00 1131.3 838 73.7
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 0.0e+00 1114.0 903 67.1
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 0.0e+00 1084.3 896 64.4
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 0.0e+00 1083.9 900 64.7
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 0.0e+00 1079.7 893 64.9
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 0.0e+00 1077.8 899 65.4
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 1.9e-308 1062.4 897 65.4
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 5.6e-308 1060.8 896 63.5
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 1.3e-304 1049.7 899 65.0
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 5.5e-303 1044.3 897 64.0
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 7.9e-302 1040.4 900 63.6
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 1.1e-300 1036.6 903 62.0
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 8.4e-296 1020.4 879 63.4
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 2.7e-294 1015.4 851 65.1
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.5e-292 1009.6 893 61.1
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 7.4e-292 1007.3 893 61.1
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 7.4e-292 1007.3 899 61.7
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 2.8e-291 1005.4 897 61.2
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 2.4e-290 1002.3 899 61.6
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 5.3e-290 1001.1 899 61.5
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 6.9e-290 1000.7 899 61.5
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 7.7e-289 997.3 893 60.5
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 3.6e-286 988.4 897 61.2
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 2.3e-285 985.7 894 61.1
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 4.2e-279 964.9 905 60.9
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 1.4e-274 949.9 898 60.2
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 3.1e-274 948.7 897 60.1
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 4.5e-273 944.9 904 58.1
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 1.0e-272 943.7 898 60.4
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 3.2e-271 938.7 895 58.8
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 4.0e-269 931.8 906 59.2
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 6.7e-269 931.0 901 58.3
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 8.8e-269 930.6 843 61.1
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 3.3e-268 928.7 901 59.3
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 9.7e-268 927.2 895 58.5
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.6e-265 919.8 898 58.0
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 4.5e-265 918.3 904 58.0
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 4.5e-265 918.3 904 58.0
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 2.5e-263 912.5 897 57.4
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.8e-261 906.4 980 53.6
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 3.1e-258 895.6 886 57.4
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.9e-256 889.0 896 56.9
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 9.5e-255 884.0 902 58.1
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 5.7e-252 874.8 895 56.8
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 1.4e-250 870.2 896 53.8
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 1.7e-248 863.2 879 55.7
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 1.1e-247 860.5 900 56.4
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 1.2e-246 857.1 896 54.8
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 1.7e-243 846.7 900 55.9
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 2.2e-243 846.3 903 56.0
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 6.4e-243 844.7 870 56.3
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 3.5e-241 839.0 903 55.3
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 7.8e-241 837.8 895 52.2
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 5.0e-240 835.1 896 53.1
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 9.5e-239 830.9 895 51.8
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 8.9e-237 824.3 900 53.0
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 1.1e-234 817.4 899 52.4
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 4.1e-234 815.5 906 54.2
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 2.3e-232 809.7 885 55.5
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.5e-231 807.0 882 51.5
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.1e-229 800.8 869 54.7
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 1.1e-229 800.8 901 53.7
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 7.5e-228 794.7 883 52.1
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.4e-221 773.9 890 51.9
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 1.8e-221 773.5 868 51.8
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 2.6e-220 769.6 863 53.4
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 9.2e-218 761.1 901 50.8
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 2.2e-211 740.0 631 64.0
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 6.4e-211 738.4 899 49.9
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 7.1e-210 734.9 965 46.3
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 1.5e-207 727.2 904 50.8
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 2.8e-206 723.0 889 50.6
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.4e-205 720.7 889 50.5
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.8e-205 720.3 954 45.7
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.8e-205 720.3 951 45.6
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 1.8e-205 720.3 900 50.4
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 5.3e-205 718.8 875 49.6
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 9.0e-205 718.0 933 47.9
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 1.3e-203 714.1 935 47.9
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 6.2e-198 695.3 901 48.9
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 1.5e-196 690.6 907 46.4
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 1.1e-194 684.5 783 51.1
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 1.2e-193 681.0 692 56.6
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 6.0e-193 678.7 893 45.9
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 3.0e-192 676.4 973 44.3
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 1.3e-187 661.0 896 45.1
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 7.1e-186 655.2 904 44.7
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 2.5e-183 646.7 904 43.9
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 1.3e-182 644.4 873 46.6
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.6e-182 644.0 845 46.7
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 6.3e-182 642.1 814 47.7
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 3.4e-180 636.3 887 46.7
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.6e-174 617.5 835 44.1
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 4.1e-173 612.8 904 44.5
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 2.2e-171 607.1 710 51.0
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 3.2e-170 603.2 834 43.9
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.5e-167 594.3 681 51.2
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 3.1e-165 586.6 884 43.7
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 5.3e-165 585.9 900 43.3
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 4.5e-164 582.8 920 43.0
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 5.0e-163 579.3 918 42.3
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 1.1e-162 578.2 914 43.0
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 1.4e-162 577.8 884 43.3
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 3.6e-161 573.2 919 41.8
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 6.7e-160 568.9 918 43.0
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 1.5e-159 567.8 915 42.5
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 1.5e-159 567.8 915 42.5
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 3.1e-157 560.1 916 42.0
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 9.1e-157 558.5 922 42.0
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 9.1e-157 558.5 915 41.4
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 1.3e-155 554.7 919 42.2
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 1.3e-155 554.7 919 42.2
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 2.7e-145 520.4 895 42.0
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.5e-143 514.6 860 40.8
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 3.7e-142 510.0 923 39.0
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 2.6e-135 487.3 624 48.7
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 3.0e-128 463.8 849 38.2
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 8.6e-123 445.7 946 38.8
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 4.7e-121 439.9 884 37.6
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 1.7e-118 431.4 930 38.7
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 3.0e-107 394.0 895 35.4
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 2.2e-102 377.9 948 33.2
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.8e-96 358.2 915 33.1
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 1.1e-90 339.0 941 31.6
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 7.3e-90 336.3 535 43.4
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 1.6e-65 255.4 455 35.6
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 2.6e-55 221.5 617 32.6
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 2.7e-52 211.5 237 55.7
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 6.7e-51 206.8 212 56.1
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 6.3e-49 200.3 185 59.5
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.8e-43 182.2 860 28.3
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 3.0e-43 181.4 332 38.6
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.1e-42 179.5 381 34.6
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.0e-35 156.4 357 33.9
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 5.7e-34 150.6 228 39.5
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 4.8e-33 147.5 209 48.3
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 1.1e-29 136.3 612 26.8
SEGI_39803 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 1.5e-26 125.9 1208 22.1
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 4.1e-24 117.9 537 26.1
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 7.2e-21 107.1 1145 21.2
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 1.2e-20 106.3 141 46.8
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 3.6e-20 104.8 1235 21.5
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 1.0e-14 86.7 153 37.9
Nn1g03080 Nelumbo nucifera HOM05D002769 ORTHO05D003160 2.9e-14 85.1 1020 21.9
MBI07_g08924_MAGBIO Magnolia biondii HOM05D002769 ORTHO05D003160 3.6e-12 78.2 1029 21.6
Manes.12G040100 Manihot esculenta HOM05D002769 ORTHO05D003160 4.7e-12 77.8 1042 20.7
ATR0759G019 Amborella trichopoda HOM05D002769 ORTHO05D001913 1.8e-11 75.9 262 29.0
Gohir.A01G219300 Gossypium hirsutum HOM05D002036 ORTHO05D001913 2.3e-11 75.5 909 23.4
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 5.2e-11 74.3 161 36.0
TAR636G3291 Trochodendron aralioides HOM05D002769 ORTHO05D003160 1.3e-09 69.7 1016 21.2
Gorai.002G253500 Gossypium raimondii HOM05D002036 ORTHO05D001913 3.7e-09 68.2 921 23.3
PSO764G0032 Papaver somniferum HOM05D002769 ORTHO05D003160 6.4e-09 67.4 1070 21.8
MSTRG.18369 Avicennia marina HOM05D002769 ORTHO05D003160 1.4e-08 66.2 987 21.4
Ah.08g213810 Amaranthus hybridus HOM05D002769 ORTHO05D003160 1.9e-08 65.9 960 20.9
CANSAT49G0001 Cannabis sativa HOM05D002036 ORTHO05D001913 1.9e-08 65.9 975 21.6
Gohir.D01G208400 Gossypium hirsutum HOM05D002036 ORTHO05D001913 1.9e-08 65.9 901 23.1
ATR0559G060 Amborella trichopoda HOM05D002515 ORTHO05D002722 3.2e-08 65.1 266 27.8
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 4.1e-08 64.7 109 39.4
QL09p043841 Quercus lobata HOM05D002769 ORTHO05D003160 5.4e-08 64.3 1029 20.7
Cfa017446 Carpinus fangiana HOM05D002036 ORTHO05D001913 9.2e-08 63.5 875 23.7
MD12G1134400 Malus domestica HOM05D002036 ORTHO05D001913 2.7e-07 62.0 919 21.3
HPP92_006594 Vanilla planifolia HOM05D002036 ORTHO05D001913 2.7e-07 62.0 294 24.1
Psat6g068640 Pisum sativum HOM05D002036 ORTHO05D001913 6.0e-07 60.8 976 22.4
QL08p057863 Quercus lobata HOM05D002036 ORTHO05D001913 1.0e-06 60.1 252 23.0
unitig_26.g9208 Utricularia gibba HOM05D002036 ORTHO05D001913 1.0e-06 60.1 269 23.0
unitig_749.g14259 Utricularia gibba HOM05D002036 ORTHO05D001913 1.3e-06 59.7 280 22.5
Dinv25954 Davidia involucrata HOM05D002036 ORTHO05D001913 3.0e-06 58.5 298 27.2
HanXRQChr15g0470071 Helianthus annuus HOM05D002515 ORTHO05D002722 3.9e-06 58.2 182 30.2
PSO339G4477 Papaver somniferum HOM05D002515 ORTHO05D002722 3.9e-06 58.2 187 32.1
Sabra16G0088100 Salix brachista HOM05D002036 ORTHO05D001913 5.0e-06 57.8 288 28.5
HPP92_019812 Vanilla planifolia HOM05D002036 ORTHO05D001913 5.0e-06 57.8 254 24.0
Nn3g19851 Nelumbo nucifera HOM05D002769 ORTHO05D003160 6.6e-06 57.4 584 22.6
PSO384G3367 Papaver somniferum HOM05D002515 ORTHO05D002722 6.6e-06 57.4 188 32.4
Actinidia05291 Actinidia chinensis HOM05D002036 ORTHO05D001913 8.6e-06 57.0 934 22.1
Duzib138G1260 Durio zibethinus HOM05D002769 ORTHO05D003160 8.6e-06 57.0 649 23.1
ECA236G1034 Erigeron canadensis HOM05D002515 ORTHO05D005057 8.6e-06 57.0 153 29.4


User provided reference genes

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